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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OMHE] human oral metagenome; human oral
HIT:
163 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183508667
OMHE01010808
[OMHE] human oral metagenome; human oral
14
99
+
Leu
GAG
[ENA]
¡û
>WENV183508596
OMHE01002954
[OMHE] human oral metagenome; human oral
16
91
+
Arg
TCT
[ENA]
¡û
>WENV183508621
OMHE01006166
[OMHE] human oral metagenome; human oral
28
104
+
Asp
GTC
[ENA]
¡û
>WENV183508584
OMHE01002626
[OMHE] human oral metagenome; human oral
60
132
+
Val
CAC
[ENA]
¡û
>WENV183508644
OMHE01007950
[OMHE] human oral metagenome; human oral
78
151
+
Lys
CTT
[ENA]
¡û
>WENV183508651
OMHE01008707
[OMHE] human oral metagenome; human oral
79
154
+
Gly
GCC
[ENA]
¡û
>WENV183508675
OMHE01011403
[OMHE] human oral metagenome; human oral
94
22
-
Arg
CCT
[ENA]
¡û
>WENV183508620
OMHE01005698
[OMHE] human oral metagenome; human oral
102
12
-
Ser
CGA
[ENA]
¡û
>WENV183508683
OMHE01013608
[OMHE] human oral metagenome; human oral
107
182
+
Arg
ACG
[ENA]
¡û
>WENV183508642
OMHE01007824
[OMHE] human oral metagenome; human oral
109
35
-
His
GTG
[ENA]
¡û
>WENV183508550
OMHE01000579
[OMHE] human oral metagenome; human oral
112
38
-
Leu
TAA
[ENA]
¡û
>WENV183508611
OMHE01004401
[OMHE] human oral metagenome; human oral
113
189
+
Arg
CCT
[ENA]
¡û
>WENV183508624
OMHE01006390
[OMHE] human oral metagenome; human oral
114
26
-
Ser
CGA
[ENA]
¡û
>WENV183508648
OMHE01008529
[OMHE] human oral metagenome; human oral
116
44
-
Gln
CTG
[ENA]
¡û
>WENV183508599
OMHE01003320
[OMHE] human oral metagenome; human oral
118
26
-
Ser
GCT
[ENA]
¡û
>WENV183508635
OMHE01007237
[OMHE] human oral metagenome; human oral
120
45
-
Val
TAC
[ENA]
¡û
>WENV183508623
OMHE01006340
[OMHE] human oral metagenome; human oral
157
84
-
Arg
TCT
[ENA]
¡û
>WENV183508681
OMHE01012839
[OMHE] human oral metagenome; human oral
158
231
+
Lys
TTT
[ENA]
¡û
>WENV183508678
OMHE01012111
[OMHE] human oral metagenome; human oral
159
235
+
Val
GAC
[ENA]
¡û
>WENV183508603
OMHE01003908
[OMHE] human oral metagenome; human oral
162
87
-
Phe
GAA
[ENA]
¡û
>WENV183508658
OMHE01009755
[OMHE] human oral metagenome; human oral
169
93
-
Ile
GAT
[ENA]
¡û
>WENV183508680
OMHE01012796
[OMHE] human oral metagenome; human oral
171
82
-
Ser
GCT
[ENA]
¡û
>WENV183508659
OMHE01009791
[OMHE] human oral metagenome; human oral
174
103
-
Gly
TCC
[ENA]
¡û
>WENV183508541
OMHE01000312
[OMHE] human oral metagenome; human oral
183
257
+
Arg
ACG
[ENA]
¡û
>WENV183508641
OMHE01007727
[OMHE] human oral metagenome; human oral
191
118
-
Glu
CTC
[ENA]
¡û
>WENV183508652
OMHE01008707
[OMHE] human oral metagenome; human oral
195
268
+
Cys
GCA
[ENA]
¡û
>WENV183508570
OMHE01001861
[OMHE] human oral metagenome; human oral
208
279
+
Gln
TTG
[ENA]
¡û
>WENV183508632
OMHE01006896
[OMHE] human oral metagenome; human oral
211
137
-
Val
GAC
[ENA]
¡û
>WENV183508567
OMHE01001468
[OMHE] human oral metagenome; human oral
213
126
-
Ser
CGA
[ENA]
¡û
>WENV183508663
OMHE01010500
[OMHE] human oral metagenome; human oral
218
137
-
Tyr
GTA
[ENA]
¡û
>WENV183508578
OMHE01002193
[OMHE] human oral metagenome; human oral
226
298
+
Gln
TTG
[ENA]
¡û
>WENV183508634
OMHE01007171
[OMHE] human oral metagenome; human oral
231
306
+
His
GTG
[ENA]
¡û
>WENV183508580
OMHE01002243
[OMHE] human oral metagenome; human oral
237
310
+
Asn
GTT
[ENA]
¡û
>WENV183508679
OMHE01012436
[OMHE] human oral metagenome; human oral
253
328
+
Thr
CGT
[ENA]
¡û
>WENV183508598
OMHE01002997
[OMHE] human oral metagenome; human oral
266
193
-
Glu
CTC
[ENA]
¡û
>WENV183508645
OMHE01008020
[OMHE] human oral metagenome; human oral
270
186
-
Leu
CAA
[ENA]
¡û
>WENV183508563
OMHE01001256
[OMHE] human oral metagenome; human oral
271
344
+
Val
CAC
[ENA]
¡û
>WENV183508605
OMHE01004172
[OMHE] human oral metagenome; human oral
280
365
+
Ser
TGA
[ENA]
¡û
>WENV183508682
OMHE01013544
[OMHE] human oral metagenome; human oral
283
209
-
Pro
GGG
[ENA]
¡û
>WENV183508665
OMHE01010735
[OMHE] human oral metagenome; human oral
285
358
+
Lys
TTT
[ENA]
¡û
>WENV183508631
OMHE01006896
[OMHE] human oral metagenome; human oral
287
216
-
Cys
GCA
[ENA]
¡û
>WENV183508650
OMHE01008635
[OMHE] human oral metagenome; human oral
292
219
-
Gly
CCC
[ENA]
¡û
>WENV183508640
OMHE01007727
[OMHE] human oral metagenome; human oral
292
220
-
Gln
CTG
[ENA]
¡û
>WENV183508588
OMHE01002698
[OMHE] human oral metagenome; human oral
311
237
-
Ile
GAT
[ENA]
¡û
>WENV183508668
OMHE01010923
[OMHE] human oral metagenome; human oral
311
386
+
Ala
GGC
[ENA]
¡û
>WENV183508566
OMHE01001395
[OMHE] human oral metagenome; human oral
313
237
-
Pro
CGG
[ENA]
¡û
>WENV183508666
OMHE01010743
[OMHE] human oral metagenome; human oral
322
232
-
Ser
GGA
[ENA]
¡û
>WENV183508646
OMHE01008060
[OMHE] human oral metagenome; human oral
325
400
+
Pro
TGG
[ENA]
¡û
>WENV183508522
OMHE01000013
[OMHE] human oral metagenome; human oral
328
243
-
Leu
CAG
[ENA]
¡û
>WENV183508674
OMHE01011215
[OMHE] human oral metagenome; human oral
333
261
-
Lys
TTT
[ENA]
¡û
>WENV183508661
OMHE01010027
[OMHE] human oral metagenome; human oral
334
259
-
Val
TAC
[ENA]
¡û
>WENV183508576
OMHE01002121
[OMHE] human oral metagenome; human oral
348
272
-
Pro
GGG
[ENA]
¡û
>WENV183508597
OMHE01002997
[OMHE] human oral metagenome; human oral
364
292
-
Gln
CTG
[ENA]
¡û
>WENV183508613
OMHE01004487
[OMHE] human oral metagenome; human oral
369
445
+
Pro
CGG
[ENA]
¡û
>WENV183508630
OMHE01006896
[OMHE] human oral metagenome; human oral
390
317
-
Gly
GCC
[ENA]
¡û
>WENV183508669
OMHE01010923
[OMHE] human oral metagenome; human oral
390
465
+
Glu
TTC
[ENA]
¡û
>WENV183508677
OMHE01012050
[OMHE] human oral metagenome; human oral
394
308
-
Ser
TGA
[ENA]
¡û
>WENV183508676
OMHE01011960
[OMHE] human oral metagenome; human oral
399
473
+
Ile
GAT
[ENA]
¡û
>WENV183508653
OMHE01008707
[OMHE] human oral metagenome; human oral
399
485
+
Leu
TAA
[ENA]
¡û
>WENV183508664
OMHE01010662
[OMHE] human oral metagenome; human oral
401
319
-
Tyr
GTA
[ENA]
¡û
>WENV183508673
OMHE01011215
[OMHE] human oral metagenome; human oral
411
336
-
Asn
GTT
[ENA]
¡û
>WENV183508595
OMHE01002903
[OMHE] human oral metagenome; human oral
411
486
+
Pro
CGG
[ENA]
¡û
>WENV183508627
OMHE01006688
[OMHE] human oral metagenome; human oral
429
505
+
Pro
GGG
[ENA]
¡û
>WENV183508672
OMHE01011004
[OMHE] human oral metagenome; human oral
430
355
-
Thr
GGT
[ENA]
¡û
>WENV183508639
OMHE01007698
[OMHE] human oral metagenome; human oral
439
363
-
Phe
GAA
[ENA]
¡û
>WENV183508656
OMHE01008819
[OMHE] human oral metagenome; human oral
468
544
+
Pro
CGG
[ENA]
¡û
>WENV183508670
OMHE01010948
[OMHE] human oral metagenome; human oral
469
545
+
Pro
CGG
[ENA]
¡û
>WENV183508607
OMHE01004226
[OMHE] human oral metagenome; human oral
481
565
+
Leu
TAA
[ENA]
¡û
>WENV183508618
OMHE01005348
[OMHE] human oral metagenome; human oral
487
560
+
Thr
CGT
[ENA]
¡û
>WENV183508601
OMHE01003632
[OMHE] human oral metagenome; human oral
490
414
-
Pro
CGG
[ENA]
¡û
>WENV183508617
OMHE01005324
[OMHE] human oral metagenome; human oral
490
564
+
Pro
CGG
[ENA]
¡û
>WENV183508662
OMHE01010380
[OMHE] human oral metagenome; human oral
490
577
+
Ser
CGA
[ENA]
¡û
>WENV183508636
OMHE01007345
[OMHE] human oral metagenome; human oral
494
576
+
Tyr
GTA
[ENA]
¡û
>WENV183508654
OMHE01008707
[OMHE] human oral metagenome; human oral
497
570
+
Arg
ACG
[ENA]
¡û
>WENV183508545
OMHE01000440
[OMHE] human oral metagenome; human oral
502
575
+
Lys
CTT
[ENA]
¡û
>WENV183508657
OMHE01009377
[OMHE] human oral metagenome; human oral
509
417
-
Ser
GCT
[ENA]
¡û
>WENV183508671
OMHE01011004
[OMHE] human oral metagenome; human oral
515
442
-
Gly
TCC
[ENA]
¡û
>WENV183508560
OMHE01001209
[OMHE] human oral metagenome; human oral
529
454
-
Val
TAC
[ENA]
¡û
>WENV183508629
OMHE01006896
[OMHE] human oral metagenome; human oral
536
608
+
Val
CAC
[ENA]
¡û
>WENV183508638
OMHE01007698
[OMHE] human oral metagenome; human oral
538
464
-
Asp
GTC
[ENA]
¡û
>WENV183508555
OMHE01000897
[OMHE] human oral metagenome; human oral
547
474
-
Thr
CGT
[ENA]
¡û
>WENV183508612
OMHE01004437
[OMHE] human oral metagenome; human oral
573
489
-
Leu
TAG
[ENA]
¡û
>WENV183508568
OMHE01001499
[OMHE] human oral metagenome; human oral
573
648
+
Pro
TGG
[ENA]
¡û
>WENV183508660
OMHE01009957
[OMHE] human oral metagenome; human oral
578
497
-
Leu
CAA
[ENA]
¡û
>WENV183508649
OMHE01008552
[OMHE] human oral metagenome; human oral
606
678
+
Lys
TTT
[ENA]
¡û
>WENV183508655
OMHE01008707
[OMHE] human oral metagenome; human oral
612
687
+
Pro
TGG
[ENA]
¡û
>WENV183508633
OMHE01007054
[OMHE] human oral metagenome; human oral
633
549
-
Leu
TAG
[ENA]
¡û
>WENV183508643
OMHE01007886
[OMHE] human oral metagenome; human oral
646
562
-
Leu
TAG
[ENA]
¡û
>WENV183508534
OMHE01000124
[OMHE] human oral metagenome; human oral
653
735
+
Leu
TAG
[ENA]
¡û
>WENV183508608
OMHE01004237
[OMHE] human oral metagenome; human oral
664
591
-
Trp
CCA
[ENA]
¡û
>WENV183508614
OMHE01004808
[OMHE] human oral metagenome; human oral
664
738
+
fMet
CAT
[ENA]
¡û
>WENV183508628
OMHE01006887
[OMHE] human oral metagenome; human oral
671
596
-
Ile2
CAT
[ENA]
¡û
>WENV183508558
OMHE01000996
[OMHE] human oral metagenome; human oral
682
754
+
Arg
CCT
[ENA]
¡û
>WENV183508589
OMHE01002779
[OMHE] human oral metagenome; human oral
682
764
+
Tyr
GTA
[ENA]
¡û
>WENV183508571
OMHE01001928
[OMHE] human oral metagenome; human oral
683
758
+
Arg
ACG
[ENA]
¡û
>WENV183508616
OMHE01005311
[OMHE] human oral metagenome; human oral
687
613
-
Asp
GTC
[ENA]
¡û
>WENV183508622
OMHE01006218
[OMHE] human oral metagenome; human oral
691
767
+
fMet
CAT
[ENA]
¡û
>WENV183508647
OMHE01008159
[OMHE] human oral metagenome; human oral
713
639
-
Arg
CCG
[ENA]
¡û
>WENV183508582
OMHE01002435
[OMHE] human oral metagenome; human oral
713
801
+
Ser
TGA
[ENA]
¡û
>WENV183508626
OMHE01006596
[OMHE] human oral metagenome; human oral
714
797
+
Leu
CAG
[ENA]
¡û
>WENV183508594
OMHE01002890
[OMHE] human oral metagenome; human oral
721
648
-
Ala
TGC
[ENA]
¡û
>WENV183508637
OMHE01007698
[OMHE] human oral metagenome; human oral
737
662
-
Glu
TTC
[ENA]
¡û
>WENV183508625
OMHE01006483
[OMHE] human oral metagenome; human oral
756
830
+
Ile2
CAT
[ENA]
¡û
>WENV183508615
OMHE01005311
[OMHE] human oral metagenome; human oral
784
711
-
Glu
TTC
[ENA]
¡û
>WENV183508619
OMHE01005548
[OMHE] human oral metagenome; human oral
785
695
-
Ser
GCT
[ENA]
¡û
>WENV183508581
OMHE01002376
[OMHE] human oral metagenome; human oral
789
863
+
Ile2
CAT
[ENA]
¡û
>WENV183508587
OMHE01002668
[OMHE] human oral metagenome; human oral
829
745
-
Leu
CAG
[ENA]
¡û
>WENV183508590
OMHE01002779
[OMHE] human oral metagenome; human oral
876
949
+
Thr
GGT
[ENA]
¡û
>WENV183508586
OMHE01002641
[OMHE] human oral metagenome; human oral
877
804
-
Gly
TCC
[ENA]
¡û
>WENV183508573
OMHE01001977
[OMHE] human oral metagenome; human oral
904
980
+
Lys
TTT
[ENA]
¡û
>WENV183508540
OMHE01000300
[OMHE] human oral metagenome; human oral
927
1013
+
Leu
GAG
[ENA]
¡û
>WENV183508543
OMHE01000359
[OMHE] human oral metagenome; human oral
937
1010
+
Gly
CCC
[ENA]
¡û
>WENV183508606
OMHE01004208
[OMHE] human oral metagenome; human oral
975
1048
+
Gly
GCC
[ENA]
¡û
>WENV183508591
OMHE01002779
[OMHE] human oral metagenome; human oral
987
1061
+
Met
CAT
[ENA]
¡û
>WENV183508592
OMHE01002790
[OMHE] human oral metagenome; human oral
989
915
-
Arg
CCT
[ENA]
¡û
>WENV183508600
OMHE01003533
[OMHE] human oral metagenome; human oral
998
1088
+
Leu
GAG
[ENA]
¡û
>WENV183508604
OMHE01003981
[OMHE] human oral metagenome; human oral
1034
1108
+
fMet
CAT
[ENA]
¡û
>WENV183508610
OMHE01004293
[OMHE] human oral metagenome; human oral
1037
965
-
Val
GAC
[ENA]
¡û
>WENV183508609
OMHE01004293
[OMHE] human oral metagenome; human oral
1109
1038
-
Cys
GCA
[ENA]
¡û
>WENV183508565
OMHE01001381
[OMHE] human oral metagenome; human oral
1117
1191
+
Thr
TGT
[ENA]
¡û
>WENV183508577
OMHE01002128
[OMHE] human oral metagenome; human oral
1119
1194
+
Lys
CTT
[ENA]
¡û
>WENV183508585
OMHE01002641
[OMHE] human oral metagenome; human oral
1127
1200
+
Pro
TGG
[ENA]
¡û
>WENV183508544
OMHE01000372
[OMHE] human oral metagenome; human oral
1153
1080
-
Gly
CCC
[ENA]
¡û
>WENV183508551
OMHE01000665
[OMHE] human oral metagenome; human oral
1156
1080
-
Leu
TAA
[ENA]
¡û
>WENV183508583
OMHE01002575
[OMHE] human oral metagenome; human oral
1191
1264
+
Gly
TCC
[ENA]
¡û
>WENV183508602
OMHE01003824
[OMHE] human oral metagenome; human oral
1200
1127
-
Trp
CCA
[ENA]
¡û
>WENV183508561
OMHE01001216
[OMHE] human oral metagenome; human oral
1301
1374
+
Ala
TGC
[ENA]
¡û
>WENV183508536
OMHE01000185
[OMHE] human oral metagenome; human oral
1323
1394
+
Gln
TTG
[ENA]
¡û
>WENV183508593
OMHE01002887
[OMHE] human oral metagenome; human oral
1349
1422
+
Asn
GTT
[ENA]
¡û
>WENV183508574
OMHE01002074
[OMHE] human oral metagenome; human oral
1427
1521
+
Ile
TAT
[ENA]
¡û
>WENV183508557
OMHE01000988
[OMHE] human oral metagenome; human oral
1449
1365
-
Leu
TAG
[ENA]
¡û
>WENV183508572
OMHE01001944
[OMHE] human oral metagenome; human oral
1512
1439
-
Arg
TCT
[ENA]
¡û
>WENV183508569
OMHE01001823
[OMHE] human oral metagenome; human oral
1620
1545
-
Thr
TGT
[ENA]
¡û
>WENV183508579
OMHE01002232
[OMHE] human oral metagenome; human oral
1632
1557
-
His
GTG
[ENA]
¡û
>WENV183508575
OMHE01002087
[OMHE] human oral metagenome; human oral
1652
1724
+
Lys
CTT
[ENA]
¡û
>WENV183508547
OMHE01000459
[OMHE] human oral metagenome; human oral
1654
1735
+
Leu
CAA
[ENA]
¡û
>WENV183508564
OMHE01001317
[OMHE] human oral metagenome; human oral
1683
1755
+
Trp
CCA
[ENA]
¡û
>WENV183508554
OMHE01000779
[OMHE] human oral metagenome; human oral
1724
1650
-
Leu
TAA
[ENA]
¡û
>WENV183508546
OMHE01000440
[OMHE] human oral metagenome; human oral
1968
2043
+
His
GTG
[ENA]
¡û
>WENV183508562
OMHE01001227
[OMHE] human oral metagenome; human oral
2046
1971
-
Arg
CCT
[ENA]
¡û
>WENV183508559
OMHE01001081
[OMHE] human oral metagenome; human oral
2127
2052
-
Asn
GTT
[ENA]
¡û
>WENV183508552
OMHE01000704
[OMHE] human oral metagenome; human oral
2233
2148
-
Ser
GGA
[ENA]
¡û
>WENV183508556
OMHE01000988
[OMHE] human oral metagenome; human oral
2268
2341
+
Lys
CTT
[ENA]
¡û
>WENV183508535
OMHE01000178
[OMHE] human oral metagenome; human oral
2537
2611
+
Ile2
CAT
[ENA]
¡û
>WENV183508527
OMHE01000075
[OMHE] human oral metagenome; human oral
2600
2673
+
Thr
GGT
[ENA]
¡û
>WENV183508528
OMHE01000075
[OMHE] human oral metagenome; human oral
2709
2784
+
Met
CAT
[ENA]
¡û
>WENV183508553
OMHE01000731
[OMHE] human oral metagenome; human oral
2754
2827
+
Ala
GGC
[ENA]
¡û
>WENV183508537
OMHE01000216
[OMHE] human oral metagenome; human oral
2976
2901
-
Thr
TGT
[ENA]
¡û
>WENV183508538
OMHE01000220
[OMHE] human oral metagenome; human oral
3038
2956
-
Gln
TTG
[ENA]
¡û
>WENV183508526
OMHE01000047
[OMHE] human oral metagenome; human oral
3075
3160
+
Ser
GGA
[ENA]
¡û
>WENV183508548
OMHE01000491
[OMHE] human oral metagenome; human oral
3092
3163
+
Gly
CCC
[ENA]
¡û
>WENV183508530
OMHE01000090
[OMHE] human oral metagenome; human oral
3126
3198
+
Gln
CTG
[ENA]
¡û
>WENV183508549
OMHE01000539
[OMHE] human oral metagenome; human oral
3140
3227
+
Ser
GGA
[ENA]
¡û
>WENV183508531
OMHE01000090
[OMHE] human oral metagenome; human oral
3232
3305
+
Glu
CTC
[ENA]
¡û
>WENV183508524
OMHE01000014
[OMHE] human oral metagenome; human oral
3254
3165
-
Ser
GCT
[ENA]
¡û
>WENV183508542
OMHE01000356
[OMHE] human oral metagenome; human oral
3532
3605
+
Val
TAC
[ENA]
¡û
>WENV183508539
OMHE01000277
[OMHE] human oral metagenome; human oral
3909
3983
+
Thr
CGT
[ENA]
¡û
>WENV183508533
OMHE01000107
[OMHE] human oral metagenome; human oral
3950
4023
+
Thr
TGT
[ENA]
¡û
>WENV183508532
OMHE01000092
[OMHE] human oral metagenome; human oral
4106
4194
+
Ser
CGA
[ENA]
¡û
>WENV183508525
OMHE01000028
[OMHE] human oral metagenome; human oral
5006
5081
+
Ala
CGC
[ENA]
¡û
>WENV183508529
OMHE01000075
[OMHE] human oral metagenome; human oral
5019
5092
+
Trp
CCA
[ENA]
¡û
>WENV183508523
OMHE01000014
[OMHE] human oral metagenome; human oral
5021
4933
-
Ser
TGA
[ENA]
¡û
>WENV183508521
OMHE01000002
[OMHE] human oral metagenome; human oral
11673
11746
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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