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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[PJTW] soil metagenome; Soil enriched on wood chips
HIT:
109 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183732293
PJTW01002401
[PJTW] soil metagenome; Soil enriched on wood chips
3
79
+
fMet
CAT
[ENA]
¡û
>WENV183732300
PJTW01002897
[PJTW] soil metagenome; Soil enriched on wood chips
5
80
+
Ala
TGC
[ENA]
¡û
>WENV183732239
PJTW01000054
[PJTW] soil metagenome; Soil enriched on wood chips
8
83
+
Asn
GTT
[ENA]
¡û
>WENV183732245
PJTW01000143
[PJTW] soil metagenome; Soil enriched on wood chips
54
129
+
Thr
CGT
[ENA]
¡û
>WENV183732242
PJTW01000132
[PJTW] soil metagenome; Soil enriched on wood chips
64
139
+
Gly
GCC
[ENA]
¡û
>WENV183732290
PJTW01002212
[PJTW] soil metagenome; Soil enriched on wood chips
100
176
+
Met
CAT
[ENA]
¡û
>WENV183732285
PJTW01001919
[PJTW] soil metagenome; Soil enriched on wood chips
111
36
-
Asn
GTT
[ENA]
¡û
>WENV183732277
PJTW01000947
[PJTW] soil metagenome; Soil enriched on wood chips
111
36
-
Asn
GTT
[ENA]
¡û
>WENV183732294
PJTW01002401
[PJTW] soil metagenome; Soil enriched on wood chips
115
191
+
fMet
CAT
[ENA]
¡û
>WENV183732288
PJTW01002205
[PJTW] soil metagenome; Soil enriched on wood chips
147
223
+
Ile
GAT
[ENA]
¡û
>WENV183732295
PJTW01002484
[PJTW] soil metagenome; Soil enriched on wood chips
154
230
+
Ile
GAT
[ENA]
¡û
>WENV183732299
PJTW01002860
[PJTW] soil metagenome; Soil enriched on wood chips
161
236
+
Glu
TTC
[ENA]
¡û
>WENV183732271
PJTW01000576
[PJTW] soil metagenome; Soil enriched on wood chips
174
250
+
Asp
GTC
[ENA]
¡û
>WENV183732243
PJTW01000132
[PJTW] soil metagenome; Soil enriched on wood chips
180
253
+
Cys
GCA
[ENA]
¡û
>WENV183732291
PJTW01002212
[PJTW] soil metagenome; Soil enriched on wood chips
185
269
+
Leu
TAG
[ENA]
¡û
>WENV183732254
PJTW01000207
[PJTW] soil metagenome; Soil enriched on wood chips
189
264
+
Ala
GGC
[ENA]
¡û
>WENV183732296
PJTW01002484
[PJTW] soil metagenome; Soil enriched on wood chips
267
342
+
Ala
TGC
[ENA]
¡û
>WENV183732244
PJTW01000132
[PJTW] soil metagenome; Soil enriched on wood chips
267
353
+
Leu
TAA
[ENA]
¡û
>WENV183732280
PJTW01001451
[PJTW] soil metagenome; Soil enriched on wood chips
269
345
+
fMet
CAT
[ENA]
¡û
>WENV183732298
PJTW01002859
[PJTW] soil metagenome; Soil enriched on wood chips
270
195
-
Glu
TTC
[ENA]
¡û
>WENV183732278
PJTW01001153
[PJTW] soil metagenome; Soil enriched on wood chips
271
184
-
Ser
GGA
[ENA]
¡û
>WENV183732284
PJTW01001820
[PJTW] soil metagenome; Soil enriched on wood chips
283
370
+
Ser
GGA
[ENA]
¡û
>WENV183732292
PJTW01002212
[PJTW] soil metagenome; Soil enriched on wood chips
293
367
+
Gln
TTG
[ENA]
¡û
>WENV183732272
PJTW01000576
[PJTW] soil metagenome; Soil enriched on wood chips
303
378
+
Trp
CCA
[ENA]
¡û
>WENV183732255
PJTW01000207
[PJTW] soil metagenome; Soil enriched on wood chips
306
381
+
Ala
GGC
[ENA]
¡û
>WENV183732287
PJTW01002176
[PJTW] soil metagenome; Soil enriched on wood chips
308
232
-
Pro
TGG
[ENA]
¡û
>WENV183732289
PJTW01002205
[PJTW] soil metagenome; Soil enriched on wood chips
330
405
+
Ala
TGC
[ENA]
¡û
>WENV183732246
PJTW01000145
[PJTW] soil metagenome; Soil enriched on wood chips
335
411
+
Val
GAC
[ENA]
¡û
>WENV183732252
PJTW01000183
[PJTW] soil metagenome; Soil enriched on wood chips
340
416
+
Arg
TCT
[ENA]
¡û
>WENV183732273
PJTW01000628
[PJTW] soil metagenome; Soil enriched on wood chips
357
284
-
Gly
CCC
[ENA]
¡û
>WENV183732297
PJTW01002524
[PJTW] soil metagenome; Soil enriched on wood chips
361
286
-
Glu
TTC
[ENA]
¡û
>WENV183732238
PJTW01000053
[PJTW] soil metagenome; Soil enriched on wood chips
382
457
+
Phe
GAA
[ENA]
¡û
>WENV183732247
PJTW01000145
[PJTW] soil metagenome; Soil enriched on wood chips
416
492
+
Val
GAC
[ENA]
¡û
>WENV183732283
PJTW01001718
[PJTW] soil metagenome; Soil enriched on wood chips
421
327
-
SeC
TCA
[ENA]
¡û
>WENV183732286
PJTW01002176
[PJTW] soil metagenome; Soil enriched on wood chips
437
351
-
Leu
CAG
[ENA]
¡û
>WENV183732282
PJTW01001621
[PJTW] soil metagenome; Soil enriched on wood chips
473
398
-
Thr
GGT
[ENA]
¡û
>WENV183732248
PJTW01000145
[PJTW] soil metagenome; Soil enriched on wood chips
497
573
+
Val
GAC
[ENA]
¡û
>WENV183732267
PJTW01000454
[PJTW] soil metagenome; Soil enriched on wood chips
515
429
-
Leu
CAG
[ENA]
¡û
>WENV183732233
PJTW01000026
[PJTW] soil metagenome; Soil enriched on wood chips
542
626
+
Leu
CAA
[ENA]
¡û
>WENV183732281
PJTW01001621
[PJTW] soil metagenome; Soil enriched on wood chips
553
479
-
Gly
TCC
[ENA]
¡û
>WENV183732266
PJTW01000454
[PJTW] soil metagenome; Soil enriched on wood chips
633
547
-
Leu
CAG
[ENA]
¡û
>WENV183732279
PJTW01001242
[PJTW] soil metagenome; Soil enriched on wood chips
685
610
-
Thr
GGT
[ENA]
¡û
>WENV183732265
PJTW01000454
[PJTW] soil metagenome; Soil enriched on wood chips
748
662
-
Leu
CAG
[ENA]
¡û
>WENV183732251
PJTW01000156
[PJTW] soil metagenome; Soil enriched on wood chips
890
977
+
Ser
TGA
[ENA]
¡û
>WENV183732274
PJTW01000652
[PJTW] soil metagenome; Soil enriched on wood chips
920
1012
+
Ser
GCT
[ENA]
¡û
>WENV183732275
PJTW01000652
[PJTW] soil metagenome; Soil enriched on wood chips
1017
1093
+
Arg
ACG
[ENA]
¡û
>WENV183732234
PJTW01000027
[PJTW] soil metagenome; Soil enriched on wood chips
1132
1206
+
Arg
CCT
[ENA]
¡û
>WENV183732270
PJTW01000544
[PJTW] soil metagenome; Soil enriched on wood chips
1186
1111
-
Lys
TTT
[ENA]
¡û
>WENV183732276
PJTW01000652
[PJTW] soil metagenome; Soil enriched on wood chips
1244
1320
+
Arg
ACG
[ENA]
¡û
>WENV183732269
PJTW01000544
[PJTW] soil metagenome; Soil enriched on wood chips
1266
1191
-
Val
TAC
[ENA]
¡û
>WENV183732268
PJTW01000544
[PJTW] soil metagenome; Soil enriched on wood chips
1387
1312
-
Val
TAC
[ENA]
¡û
>WENV183732261
PJTW01000356
[PJTW] soil metagenome; Soil enriched on wood chips
1557
1482
-
Lys
TTT
[ENA]
¡û
>WENV183732263
PJTW01000362
[PJTW] soil metagenome; Soil enriched on wood chips
1668
1584
-
Tyr
GTA
[ENA]
¡û
>WENV183732262
PJTW01000362
[PJTW] soil metagenome; Soil enriched on wood chips
1754
1679
-
Thr
TGT
[ENA]
¡û
>WENV183732260
PJTW01000356
[PJTW] soil metagenome; Soil enriched on wood chips
1766
1691
-
Lys
TTT
[ENA]
¡û
>WENV183732264
PJTW01000432
[PJTW] soil metagenome; Soil enriched on wood chips
1881
1805
-
Pro
GGG
[ENA]
¡û
>WENV183732259
PJTW01000356
[PJTW] soil metagenome; Soil enriched on wood chips
1988
1913
-
Lys
TTT
[ENA]
¡û
>WENV183732258
PJTW01000356
[PJTW] soil metagenome; Soil enriched on wood chips
2067
1992
-
Val
TAC
[ENA]
¡û
>WENV183732249
PJTW01000147
[PJTW] soil metagenome; Soil enriched on wood chips
2232
2307
+
Phe
GAA
[ENA]
¡û
>WENV183732257
PJTW01000284
[PJTW] soil metagenome; Soil enriched on wood chips
2666
2591
-
Asn
GTT
[ENA]
¡û
>WENV183732256
PJTW01000219
[PJTW] soil metagenome; Soil enriched on wood chips
3039
2964
-
Asn
GTT
[ENA]
¡û
>WENV183732253
PJTW01000198
[PJTW] soil metagenome; Soil enriched on wood chips
3449
3363
-
Leu
GAG
[ENA]
¡û
>WENV183732250
PJTW01000150
[PJTW] soil metagenome; Soil enriched on wood chips
4343
4268
-
Ile2
CAT
[ENA]
¡û
>WENV183732241
PJTW01000073
[PJTW] soil metagenome; Soil enriched on wood chips
6426
6350
-
Asp
GTC
[ENA]
¡û
>WENV183732237
PJTW01000028
[PJTW] soil metagenome; Soil enriched on wood chips
7805
7731
-
Val
GAC
[ENA]
¡û
>WENV183732236
PJTW01000028
[PJTW] soil metagenome; Soil enriched on wood chips
7894
7823
-
Cys
GCA
[ENA]
¡û
>WENV183732235
PJTW01000028
[PJTW] soil metagenome; Soil enriched on wood chips
8012
7940
-
Gly
GCC
[ENA]
¡û
>WENV183732240
PJTW01000059
[PJTW] soil metagenome; Soil enriched on wood chips
9281
9206
-
Asn
GTT
[ENA]
¡û
>WENV183732203
PJTW01000002
[PJTW] soil metagenome; Soil enriched on wood chips
10140
10057
-
Leu
CAG
[ENA]
¡û
>WENV183732229
PJTW01000012
[PJTW] soil metagenome; Soil enriched on wood chips
15539
15613
+
Ile
GAT
[ENA]
¡û
>WENV183732230
PJTW01000012
[PJTW] soil metagenome; Soil enriched on wood chips
15781
15856
+
Ala
TGC
[ENA]
¡û
>WENV183732232
PJTW01000016
[PJTW] soil metagenome; Soil enriched on wood chips
17569
17652
+
Leu
GAG
[ENA]
¡û
>WENV183732216
PJTW01000005
[PJTW] soil metagenome; Soil enriched on wood chips
33787
33861
+
fMet
CAT
[ENA]
¡û
>WENV183732223
PJTW01000007
[PJTW] soil metagenome; Soil enriched on wood chips
35554
35628
+
Pro
GGG
[ENA]
¡û
>WENV183732226
PJTW01000008
[PJTW] soil metagenome; Soil enriched on wood chips
36152
36080
-
Gly
CCC
[ENA]
¡û
>WENV183732227
PJTW01000009
[PJTW] soil metagenome; Soil enriched on wood chips
47651
47725
+
Ala
CGC
[ENA]
¡û
>WENV183732231
PJTW01000015
[PJTW] soil metagenome; Soil enriched on wood chips
68476
68549
+
Arg
CCT
[ENA]
¡û
>WENV183732221
PJTW01000006
[PJTW] soil metagenome; Soil enriched on wood chips
68612
68687
+
Arg
CCG
[ENA]
¡û
>WENV183732228
PJTW01000009
[PJTW] soil metagenome; Soil enriched on wood chips
80363
80435
+
Gln
TTG
[ENA]
¡û
>WENV183732224
PJTW01000007
[PJTW] soil metagenome; Soil enriched on wood chips
96833
96908
+
Leu
CAA
[ENA]
¡û
>WENV183732192
PJTW01000001
[PJTW] soil metagenome; Soil enriched on wood chips
115455
115544
+
Ser
CGA
[ENA]
¡û
>WENV183732215
PJTW01000004
[PJTW] soil metagenome; Soil enriched on wood chips
120421
120337
-
Leu
TAG
[ENA]
¡û
>WENV183732210
PJTW01000004
[PJTW] soil metagenome; Soil enriched on wood chips
121571
121646
+
Lys
CTT
[ENA]
¡û
>WENV183732211
PJTW01000004
[PJTW] soil metagenome; Soil enriched on wood chips
122789
122864
+
His
GTG
[ENA]
¡û
>WENV183732212
PJTW01000004
[PJTW] soil metagenome; Soil enriched on wood chips
128006
128079
+
Arg
TCT
[ENA]
¡û
>WENV183732209
PJTW01000003
[PJTW] soil metagenome; Soil enriched on wood chips
132101
132027
-
Val
TAC
[ENA]
¡û
>WENV183732197
PJTW01000001
[PJTW] soil metagenome; Soil enriched on wood chips
149106
149020
-
Ser
GGA
[ENA]
¡û
>WENV183732225
PJTW01000007
[PJTW] soil metagenome; Soil enriched on wood chips
150615
150541
-
Val
CAC
[ENA]
¡û
>WENV183732208
PJTW01000003
[PJTW] soil metagenome; Soil enriched on wood chips
154285
154210
-
Ile2
CAT
[ENA]
¡û
>WENV183732204
PJTW01000003
[PJTW] soil metagenome; Soil enriched on wood chips
154910
154983
+
Asn
GTT
[ENA]
¡û
>WENV183732198
PJTW01000002
[PJTW] soil metagenome; Soil enriched on wood chips
165542
165634
+
Ser
TGA
[ENA]
¡û
>WENV183732196
PJTW01000001
[PJTW] soil metagenome; Soil enriched on wood chips
165727
165653
-
Pro
CGG
[ENA]
¡û
>WENV183732213
PJTW01000004
[PJTW] soil metagenome; Soil enriched on wood chips
170393
170467
+
Pro
TGG
[ENA]
¡û
>WENV183732214
PJTW01000004
[PJTW] soil metagenome; Soil enriched on wood chips
180671
180598
-
Gly
TCC
[ENA]
¡û
>WENV183732199
PJTW01000002
[PJTW] soil metagenome; Soil enriched on wood chips
185690
185781
+
Ser
GCT
[ENA]
¡û
>WENV183732200
PJTW01000002
[PJTW] soil metagenome; Soil enriched on wood chips
194848
194921
+
Arg
ACG
[ENA]
¡û
>WENV183732222
PJTW01000006
[PJTW] soil metagenome; Soil enriched on wood chips
210529
210603
+
Leu
TAA
[ENA]
¡û
>WENV183732201
PJTW01000002
[PJTW] soil metagenome; Soil enriched on wood chips
258766
258840
+
Thr
CGT
[ENA]
¡û
>WENV183732207
PJTW01000003
[PJTW] soil metagenome; Soil enriched on wood chips
273882
273808
-
Ala
GGC
[ENA]
¡û
>WENV183732220
PJTW01000005
[PJTW] soil metagenome; Soil enriched on wood chips
299842
299769
-
Trp
CCA
[ENA]
¡û
>WENV183732195
PJTW01000001
[PJTW] soil metagenome; Soil enriched on wood chips
310860
310786
-
Asp
GTC
[ENA]
¡û
>WENV183732194
PJTW01000001
[PJTW] soil metagenome; Soil enriched on wood chips
310976
310903
-
Glu
TTC
[ENA]
¡û
>WENV183732206
PJTW01000003
[PJTW] soil metagenome; Soil enriched on wood chips
315640
315567
-
Glu
CTC
[ENA]
¡û
>WENV183732205
PJTW01000003
[PJTW] soil metagenome; Soil enriched on wood chips
315806
315734
-
Gln
CTG
[ENA]
¡û
>WENV183732219
PJTW01000005
[PJTW] soil metagenome; Soil enriched on wood chips
318843
318769
-
Met
CAT
[ENA]
¡û
>WENV183732218
PJTW01000005
[PJTW] soil metagenome; Soil enriched on wood chips
318966
318893
-
Thr
GGT
[ENA]
¡û
>WENV183732217
PJTW01000005
[PJTW] soil metagenome; Soil enriched on wood chips
319276
319194
-
Tyr
GTA
[ENA]
¡û
>WENV183732193
PJTW01000001
[PJTW] soil metagenome; Soil enriched on wood chips
333476
333549
+
Lys
TTT
[ENA]
¡û
>WENV183732202
PJTW01000002
[PJTW] soil metagenome; Soil enriched on wood chips
375234
375159
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK