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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Actinomycetota
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>PL201001330
CP059000
Actinomycetota
Mycobacterium avium subsp. hominissuis HP17 plasmid:pHP17a [CP059000]
103547
103472
-
Lys
TTT
[ENA]
¡û
>PL201000008
AP020327
Actinomycetota
Mycobacterium avium subsp. hominissuis JP-H-1 plasmid:p1-JPH1 [AP020327]
108389
108298
-
Ser
GCT
[ENA]
¡û
>PL201000007
AP020327
Actinomycetota
Mycobacterium avium subsp. hominissuis JP-H-1 plasmid:p1-JPH1 [AP020327]
108491
108418
-
Arg
ACG
[ENA]
¡û
>PL201000052
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
16837
16761
-
Thr
CGT
[ENA]
¡û
>PL201000051
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
16929
16853
-
Ile
TAT
[ENA]
¡û
>PL201000050
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17013
16937
-
Arg
CCT
[ENA]
¡û
>PL201000049
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17092
17015
-
Leu
TAA
[ENA]
¡û
>PL201000048
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17175
17099
-
Arg
ACG
[ENA]
¡û
>PL201000047
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17259
17185
-
Arg
CCG
[ENA]
¡û
>PL201000046
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17345
17270
-
His
GTG
[ENA]
¡û
>PL201000045
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17435
17346
-
Ser
GCT
[ENA]
¡û
>PL203000011
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17522
17450
-
Ala
TGC
[ENA]
¡û
>PL201000044
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17599
17524
-
Asp
GTC
[ENA]
¡û
>PL201000043
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17683
17607
-
Ile
GAT
[ENA]
¡û
>PL201000042
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17761
17689
-
Glu
TTC
[ENA]
¡û
>PL203000010
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17849
17771
-
Phe
GAA
[ENA]
¡û
>PL201000041
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17925
17851
-
Glu
CTC
[ENA]
¡û
>PL201000040
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
18002
17929
-
Gln
TTG
[ENA]
¡û
>PL201000039
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
18090
18017
-
Gln
CTG
[ENA]
¡û
>PL201000038
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
18180
18093
-
Tyr
GTA
[ENA]
¡û
>PL201000037
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
18270
18182
-
Asn
GTT
[ENA]
¡û
>PL201000036
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
18952
18876
-
fMet
CAT
[ENA]
¡û
>PL201000035
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19038
18966
-
Val
TAC
[ENA]
¡û
>PL201000034
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19133
19055
-
Pro
TGG
[ENA]
¡û
>PL201000033
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19212
19135
-
Trp
CCA
[ENA]
¡û
>PL201000032
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19287
19216
-
Cys
GCA
[ENA]
¡û
>PL201000031
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19365
19292
-
Gly
TCC
[ENA]
¡û
>PL203000009
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19449
19375
-
Lys
CTT
[ENA]
¡û
>PL203000008
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19529
19456
-
Lys
TTT
[ENA]
¡û
>PL201000030
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19607
19533
-
Leu
CAG
[ENA]
¡û
>PL201000029
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19705
19619
-
Leu
CAA
[ENA]
¡û
>PL201000841
CP050126
Actinomycetota
Rhodococcus erythropolis KB1 plasmid:plas2 [CP050126]
4403
4328
-
Ala
GGC
[ENA]
¡û
>PL201000712
CP046573
Actinomycetota
Rhodococcus sp. WAY2 plasmid:pRWAY01 [CP046573]
824552
824480
-
Gly
CCC
[ENA]
¡û
>PL201001226
CP054917
Actinomycetota
Streptomyces sp. NA02950 plasmid:unnamed [CP054917]
52818
52892
+
fMet
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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