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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
HIT:
77 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1016588
SRR027364.11298
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
128
52
-
Ile
TAT
[SRA]
>SRA1016589
SRR027364.11342
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
127
51
-
Ile
TAT
[SRA]
>SRA1016590
SRR027364.11685
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
128
52
-
Ile
TAT
[SRA]
>SRA1016585
SRR027364.1347
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
128
52
-
Ile
TAT
[SRA]
>SRA1016591
SRR027364.13839
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
128
52
-
Ile
TAT
[SRA]
>SRA1016586
SRR027364.1496
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
128
52
-
Ile
TAT
[SRA]
>SRA1016592
SRR027364.17874
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
153
79
-
Gly
CCC
[SRA]
>SRA1016587
SRR027364.5699
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
128
52
-
Ile
TAT
[SRA]
>SRA1016593
SRR027365.10272
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
194
266
+
Thr
CGT
[SRA]
>SRA1016603
SRR027367.10410
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016604
SRR027367.10496
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016605
SRR027367.12583
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
122
47
-
Ala
GGC
[SRA]
>SRA1016606
SRR027367.13096
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016607
SRR027367.13227
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016608
SRR027367.13919
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016609
SRR027367.14502
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016610
SRR027367.15390
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016611
SRR027367.15448
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016612
SRR027367.15641
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016613
SRR027367.15655
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016614
SRR027367.16207
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016615
SRR027367.17376
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016616
SRR027367.17995
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016617
SRR027367.18469
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016618
SRR027367.18697
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016619
SRR027367.19135
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
70
146
+
His
GTG
[SRA]
>SRA1016620
SRR027367.19591
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016621
SRR027367.19797
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016622
SRR027367.20569
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
21
97
+
Met
CAT
[SRA]
>SRA1016623
SRR027367.20608
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
68
144
+
His
GTG
[SRA]
>SRA1016624
SRR027367.20830
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
68
144
+
His
GTG
[SRA]
>SRA1016594
SRR027367.2713
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
186
113
-
Gly
TCC
[SRA]
>SRA1016595
SRR027367.3456
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016596
SRR027367.3600
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016597
SRR027367.4226
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016598
SRR027367.4594
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
Arg
GCG
[SRA]
>SRA1016599
SRR027367.5287
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016600
SRR027367.7455
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016601
SRR027367.8800
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
70
146
+
His
GTG
[SRA]
>SRA1016602
SRR027367.9590
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016625
SRR027368.15822
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
128
52
-
Ile
TAT
[SRA]
>SRA1016626
SRR027368.22838
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
60
134
+
Thr
GGT
[SRA]
>SRA1016627
SRR027368.36912
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016628
SRR027368.38344
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
128
52
-
Ile
TAT
[SRA]
>SRA1016629
SRR027369.25809
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
252
179
-
Glu
CTC
[SRA]
>SRA1016630
SRR027369.32567
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016631
SRR027369.35373
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016632
SRR027369.38678
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
252
179
-
Glu
CTC
[SRA]
>SRA1016633
SRR027369.38993
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016634
SRR027369.39125
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
262
174
-
Leu
TAA
[SRA]
>SRA1016635
SRR027369.39585
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
75
162
+
Ser
GGA
[SRA]
>SRA1016636
SRR027369.42522
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016637
SRR027369.43421
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
153
228
+
Thr
CGT
[SRA]
>SRA1016638
SRR027369.43552
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
67
143
+
His
GTG
[SRA]
>SRA1016639
SRR027369.45957
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016640
SRR027369.45981
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016641
SRR027369.46848
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
158
233
+
His
GTG
[SRA]
>SRA1016642
SRR027369.47403
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016643
SRR027369.47919
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016644
SRR027369.48378
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016645
SRR027369.48472
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016646
SRR027369.48999
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016647
SRR027369.49042
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016648
SRR027369.49731
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016649
SRR027369.50277
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016650
SRR027369.50391
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016651
SRR027369.51187
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016652
SRR027369.51195
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016653
SRR027369.51200
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016654
SRR027369.51745
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
153
228
+
His
GTG
[SRA]
>SRA1016655
SRR027369.51809
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016656
SRR027369.51946
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016657
SRR027369.52155
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
249
162
-
Ser
TGA
[SRA]
>SRA1016658
SRR027369.52527
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016659
SRR027369.54109
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
160
235
+
His
GTG
[SRA]
>SRA1016660
SRR027369.54189
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016661
SRR027369.54491
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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