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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
HIT:
137 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1000010
SRR000281.10027
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
79
3
-
Pro
CGG
[SRA]
>SRA1000011
SRR000281.10630
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
115
39
-
Met
CAT
[SRA]
>SRA1000012
SRR000281.11593
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
96
11
-
Leu
TAA
[SRA]
>SRA1000013
SRR000281.11896
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
11
87
+
Trp
CCA
[SRA]
>SRA1000014
SRR000281.16241
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
95
9
-
Leu
CAG
[SRA]
>SRA1000015
SRR000281.18016
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
21
94
+
Arg
CCG
[SRA]
>SRA1000001
SRR000281.2635
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
98
25
-
Thr
CGT
[SRA]
>SRA1000002
SRR000281.2741
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
12
97
+
Tyr
GTA
[SRA]
>SRA1000003
SRR000281.2836
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
98
25
-
Thr
CGT
[SRA]
>SRA1000004
SRR000281.2895
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
36
110
+
Arg
TCT
[SRA]
>SRA1000005
SRR000281.3119
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
38
112
+
Val
GAC
[SRA]
>SRA1000006
SRR000281.3148
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
95
9
-
Leu
CAG
[SRA]
>SRA1000016
SRR000281.37306
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
98
25
-
Thr
CGT
[SRA]
>SRA1000007
SRR000281.4482
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
2
76
+
Glu
TTC
[SRA]
>SRA1000008
SRR000281.7942
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
79
3
-
Pro
CGG
[SRA]
>SRA1000009
SRR000281.8688
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
21
96
+
Cys
GCA
[SRA]
>SRA1000023
SRR000282.12354
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
22
110
+
Ser
CGA
[SRA]
>SRA1000024
SRR000282.12948
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
22
110
+
Ser
CGA
[SRA]
>SRA1000017
SRR000282.3070
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
112
36
-
Trp
CCA
[SRA]
>SRA1000018
SRR000282.5367
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
10
86
+
His
GTG
[SRA]
>SRA1000019
SRR000282.6664
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
6
82
+
Met
CAT
[SRA]
>SRA1000020
SRR000282.7368
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
22
110
+
Ser
CGA
[SRA]
>SRA1000021
SRR000282.8076
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
6
82
+
Met
CAT
[SRA]
>SRA1000022
SRR000282.9601
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
22
110
+
Ser
CGA
[SRA]
>SRA1000025
SRR000283.1031
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
5
88
+
Tyr
GTA
[SRA]
>SRA1000030
SRR000283.15660
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
75
1
-
Met
CAT
[SRA]
>SRA1000031
SRR000283.16186
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
81
6
-
Ala
TGC
[SRA]
>SRA1000032
SRR000283.23952
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
26
102
+
Glu
CTC
[SRA]
>SRA1000033
SRR000283.29206
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
18
91
+
Val
CAC
[SRA]
>SRA1000034
SRR000283.35553
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
2
75
+
Met
CAT
[SRA]
>SRA1000026
SRR000283.4484
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
28
102
+
Ala
TGC
[SRA]
>SRA1000027
SRR000283.5064
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
93
8
-
Tyr
GTA
[SRA]
>SRA1000028
SRR000283.5990
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
75
1
-
Met
CAT
[SRA]
>SRA1000029
SRR000283.8798
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
23
98
+
Gln
TTG
[SRA]
>SRA1000037
SRR000284.11236
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
23
98
+
Phe
GAA
[SRA]
>SRA1000038
SRR000284.13783
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
25
101
+
Arg
TCT
[SRA]
>SRA1000039
SRR000284.17570
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
78
3
-
Lys
TTT
[SRA]
>SRA1000040
SRR000284.17604
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
83
8
-
Glu
TTC
[SRA]
>SRA1000041
SRR000284.20027
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
90
15
-
His
GTG
[SRA]
>SRA1000042
SRR000284.24694
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
6
80
+
Trp
CCA
[SRA]
>SRA1000043
SRR000284.27148
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
81
6
-
Gln
CTG
[SRA]
>SRA1000044
SRR000284.28670
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
85
10
-
Lys
CTT
[SRA]
>SRA1000045
SRR000284.30231
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
80
5
-
Ala
GGC
[SRA]
>SRA1000046
SRR000284.33218
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
91
15
-
Asp
GTC
[SRA]
>SRA1000047
SRR000284.35959
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
27
103
+
Asp
GTC
[SRA]
>SRA1000048
SRR000284.38852
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
105
31
-
Glu
TTC
[SRA]
>SRA1000049
SRR000284.39251
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
99
26
-
His
GTG
[SRA]
>SRA1000050
SRR000284.40450
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
78
3
-
Lys
TTT
[SRA]
>SRA1000051
SRR000284.40598
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
91
15
-
Asp
GTC
[SRA]
>SRA1000052
SRR000284.40651
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
42
118
+
Arg
TCT
[SRA]
>SRA1000053
SRR000284.42245
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
21
94
+
Gly
TCC
[SRA]
>SRA1000054
SRR000284.42384
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
72
-1
-
Glu
TTC
[SRA]
>SRA1000035
SRR000284.4374
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
14
90
+
Arg
TCT
[SRA]
>SRA1000036
SRR000284.5149
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
11
87
+
Arg
TCT
[SRA]
>SRA1000058
SRR000285.10923
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
3
79
+
Ile
GAT
[SRA]
>SRA1000059
SRR000285.13183
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
72
-1
-
Ala
TGC
[SRA]
>SRA1000060
SRR000285.13595
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
77
2
-
Ala
GGC
[SRA]
>SRA1000061
SRR000285.14552
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
25
101
+
Arg
CCG
[SRA]
>SRA1000062
SRR000285.16253
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
75
1
-
Glu
TTC
[SRA]
>SRA1000063
SRR000285.17882
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
82
9
-
Gly
GCC
[SRA]
>SRA1000064
SRR000285.28985
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
128
43
-
Tyr
GTA
[SRA]
>SRA1000055
SRR000285.2957
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
57
127
+
Gly
ACC
[SRA]
>SRA1000065
SRR000285.29686
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
73
3
-
Gly
TCC
[SRA]
>SRA1000066
SRR000285.29923
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
18
91
+
Thr
GGT
[SRA]
>SRA1000067
SRR000285.29990
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
78
3
-
Val
TAC
[SRA]
>SRA1000068
SRR000285.32553
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
26
102
+
Asn
GTT
[SRA]
>SRA1000069
SRR000285.34171
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
85
1
-
Tyr
GTA
[SRA]
>SRA1000070
SRR000285.36430
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
17
92
+
Thr
TGT
[SRA]
>SRA1000071
SRR000285.38996
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
21
95
+
Arg
CCT
[SRA]
>SRA1000072
SRR000285.40320
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
10
86
+
Met
CAT
[SRA]
>SRA1000073
SRR000285.44335
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
1
89
+
Leu
TAA
[SRA]
>SRA1000074
SRR000285.46183
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
100
25
-
Asn
GTT
[SRA]
>SRA1000075
SRR000285.47217
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
78
3
-
Val
TAC
[SRA]
>SRA1000056
SRR000285.4865
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
8
84
+
Arg
CCG
[SRA]
>SRA1000057
SRR000285.5643
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
4
78
+
His
GTG
[SRA]
>SRA1000078
SRR000286.10214
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
85
10
-
Val
TAC
[SRA]
>SRA1000079
SRR000286.12578
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
75
-1
-
Pro
TGG
[SRA]
>SRA1000080
SRR000286.12669
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
98
14
-
Tyr
GTA
[SRA]
>SRA1000081
SRR000286.18248
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
35
110
+
Ile
GAT
[SRA]
>SRA1000082
SRR000286.18540
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
105
32
-
Asp
GTC
[SRA]
>SRA1000083
SRR000286.19665
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
96
20
-
Met
CAT
[SRA]
>SRA1000084
SRR000286.20788
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
24
99
+
Ala
TGC
[SRA]
>SRA1000085
SRR000286.21053
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
2
78
+
Met
CAT
[SRA]
>SRA1000086
SRR000286.22197
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
9
84
+
Asn
GTT
[SRA]
>SRA1000087
SRR000286.23080
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
90
17
-
Gln
TTG
[SRA]
>SRA1000088
SRR000286.25598
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
5
80
+
Gly
GCC
[SRA]
>SRA1000089
SRR000286.25974
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
96
20
-
Asp
GTC
[SRA]
>SRA1000090
SRR000286.27740
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
47
120
+
Gly
TCC
[SRA]
>SRA1000091
SRR000286.30070
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
4
77
+
Cys
GCA
[SRA]
>SRA1000092
SRR000286.35649
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
1
75
+
Cys
GCA
[SRA]
>SRA1000093
SRR000286.35969
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
10
83
+
Gly
TCC
[SRA]
>SRA1000094
SRR000286.40582
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
16
100
+
Tyr
GTA
[SRA]
>SRA1000095
SRR000286.43637
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
104
18
-
Leu
GAG
[SRA]
>SRA1000096
SRR000286.43921
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
99
23
-
Ile
GAT
[SRA]
>SRA1000097
SRR000286.47261
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
5
80
+
Gly
GCC
[SRA]
>SRA1000076
SRR000286.78
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
5
80
+
Gly
GCC
[SRA]
>SRA1000077
SRR000286.7888
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
89
-1
-
Ser
GCT
[SRA]
>SRA1000098
SRR000287.1707
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
77
3
-
Phe
GAA
[SRA]
>SRA1000099
SRR000287.20476
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
109
22
-
Ser
GCT
[SRA]
>SRA1000100
SRR000287.33094
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
7
81
+
Cys
GCA
[SRA]
>SRA1000101
SRR000287.33344
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
91
16
-
His
GTG
[SRA]
>SRA1000102
SRR000287.33698
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
10
83
+
Gly
GCC
[SRA]
>SRA1000103
SRR000287.34771
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
78
4
-
Val
GAC
[SRA]
>SRA1000104
SRR000287.36089
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
11
85
+
Gln
TTG
[SRA]
>SRA1000105
SRR000287.36944
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
18
94
+
Arg
TCT
[SRA]
>SRA1000106
SRR000287.37321
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
108
33
-
Glu
TTC
[SRA]
>SRA1000107
SRR000287.38303
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
16
91
+
Thr
GGT
[SRA]
>SRA1000108
SRR000287.41637
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
108
33
-
Glu
TTC
[SRA]
>SRA1000109
SRR000287.41802
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
92
8
-
Leu
TAG
[SRA]
>SRA1000110
SRR000287.43485
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
91
16
-
His
GTG
[SRA]
>SRA1000111
SRR000287.44513
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
10
84
+
Gln
TTG
[SRA]
>SRA1000112
SRR000287.50045
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
10
84
+
Gln
TTG
[SRA]
>SRA1000113
SRR000287.53208
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
74
1
-
Met
CAT
[SRA]
>SRA1000114
SRR000287.53359
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
16
91
+
Thr
GGT
[SRA]
>SRA1000125
SRR000288.11687
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
2
79
+
Ile
GAT
[SRA]
>SRA1000126
SRR000288.13072
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
13
89
+
Ile
GAT
[SRA]
>SRA1000127
SRR000288.15861
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
99
15
-
Leu
TAG
[SRA]
>SRA1000128
SRR000288.16141
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
2
79
+
Ile
GAT
[SRA]
>SRA1000129
SRR000288.20127
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
84
13
-
Arg
CCT
[SRA]
>SRA1000130
SRR000288.25086
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
30
116
+
Leu
TAA
[SRA]
>SRA1000115
SRR000288.2646
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
2
79
+
Ile
GAT
[SRA]
>SRA1000131
SRR000288.29653
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
20
95
+
Glu
CTC
[SRA]
>SRA1000132
SRR000288.31511
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
78
3
-
Thr
TGT
[SRA]
>SRA1000116
SRR000288.3383
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
30
116
+
Leu
TAA
[SRA]
>SRA1000133
SRR000288.34176
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
112
37
-
Phe
GAA
[SRA]
>SRA1000134
SRR000288.35606
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
91
14
-
Ala
TGC
[SRA]
>SRA1000117
SRR000288.4071
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
4
78
+
Glu
TTC
[SRA]
>SRA1000118
SRR000288.4395
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
30
116
+
Leu
TAA
[SRA]
>SRA1000135
SRR000288.46328
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
92
16
-
Pro
TGG
[SRA]
>SRA1000136
SRR000288.51889
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
95
17
-
Pro
TGG
[SRA]
>SRA1000137
SRR000288.56178
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
14
90
+
Ile
GAT
[SRA]
>SRA1000119
SRR000288.6406
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
2
79
+
Ile
GAT
[SRA]
>SRA1000120
SRR000288.6600
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
30
116
+
Leu
TAA
[SRA]
>SRA1000121
SRR000288.6744
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
2
79
+
Ile
GAT
[SRA]
>SRA1000122
SRR000288.7208
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
30
116
+
Leu
TAA
[SRA]
>SRA1000123
SRR000288.7557
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
2
79
+
Ile
GAT
[SRA]
>SRA1000124
SRR000288.7672
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
30
116
+
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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