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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Bacteroidetes
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>PL191000234
CP018938
Bacteroidetes
Bacteroides fragilis Q1F2 plasmid:Q1F2-p1 (CP018938)
9814
9898
+
Tyr
GTA
[ENA]
¡û
>PL193000026
CP018938
Bacteroidetes
Bacteroides fragilis Q1F2 plasmid:Q1F2-p1 (CP018938)
9906
9979
+
Gly
TCC
[ENA]
¡û
>PL171000972
CP013294
Bacteroidetes
Chryseobacterium sp. IHB B 17019 plasmid:pAR01
3190
3277
+
Ser
GGA
[ENA]
¡û
>PL171000881
CP012859
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid16
23049
22975
-
Ala
TGC
[ENA]
¡û
>PL171000880
CP012859
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid16
23134
23060
-
Ile
GAT
[ENA]
¡û
>PL171000879
CP012859
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid16
28458
28384
-
Ala
TGC
[ENA]
¡û
>PL171000878
CP012859
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid16
28543
28469
-
Ile
GAT
[ENA]
¡û
>PL171000882
CP012860
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid2
251097
251171
+
Arg
CCT
[ENA]
¡û
>PL171000883
CP012860
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid2
733372
733448
+
Pro
GGG
[ENA]
¡û
>PL171000884
CP012860
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid2
733480
733557
+
Pro
TGG
[ENA]
¡û
>PL171000885
CP012860
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid2
733579
733668
+
Ser
GCT
[ENA]
¡û
>PL171000886
CP012860
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid2
733669
733746
+
Pro
TGG
[ENA]
¡û
>PL171000887
CP012860
Bacteroidetes
Persicobacter sp. JZB09 plasmid:JZB09-Plasmid2
733864
733939
+
Val
TAC
[ENA]
¡û
>PL171000530
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
13455
13526
+
Gln
CTG
[ENA]
¡û
>PL171000558
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
101049
100974
-
Met
CAT
[ENA]
¡û
>PL171000557
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
206165
206078
-
Ser
TGA
[ENA]
¡û
>PL171000531
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
307557
307631
+
Glu
CTC
[ENA]
¡û
>PL173000078
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
363214
363290
+
Arg
CCG
[ENA]
¡û
>PL171000532
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
487412
487487
+
Pro
TGG
[ENA]
¡û
>PL171000533
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
569700
569771
+
Pseudo
GCA
[ENA]
¡û
>PL171000534
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
597049
597123
+
Asp
GTC
[ENA]
¡û
>PL171000535
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
597159
597235
+
Asp
GTC
[ENA]
¡û
>PL171000536
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
683779
683852
+
Gly
GCC
[ENA]
¡û
>PL171000537
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
683984
684068
+
Leu
GAG
[ENA]
¡û
>PL171000538
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
684089
684162
+
Gly
GCC
[ENA]
¡û
>PL171000539
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
740396
740485
+
Ser
GCT
[ENA]
¡û
>PL171000540
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
764886
764959
+
Thr
CGT
[ENA]
¡û
>PL171000541
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
863079
863152
+
Lys
CTT
[ENA]
¡û
>PL171000542
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
863172
863245
+
Lys
CTT
[ENA]
¡û
>PL171000556
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1024741
1024665
-
Met
CAT
[ENA]
¡û
>PL171000555
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1041297
1041223
-
Pseudo
TTC
[ENA]
¡û
>PL171000543
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1169312
1169385
+
Gln
TTG
[ENA]
¡û
>PL171000544
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1258778
1258850
+
Arg
CCT
[ENA]
¡û
>PL171000554
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1313562
1313480
-
Leu
CAA
[ENA]
¡û
>PL171000545
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1349514
1349591
+
Arg
TCT
[ENA]
¡û
>PL171000546
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1522029
1522105
+
Ile
GAT
[ENA]
¡û
>PL171000547
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1522125
1522199
+
Ala
TGC
[ENA]
¡û
>PL171000548
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1614238
1614311
+
Pro
GGG
[ENA]
¡û
>PL171000549
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1637220
1637296
+
Met
CAT
[ENA]
¡û
>PL171000550
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1659793
1659868
+
Lys
TTT
[ENA]
¡û
>PL171000553
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1686157
1686081
-
Thr
TGT
[ENA]
¡û
>PL171000552
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1742843
1742766
-
Val
TAC
[ENA]
¡û
>PL171000551
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1758670
1758745
+
Val
TAC
[ENA]
¡û
>PL171000872
CP012645
Bacteroidetes
Rufibacter tibetensis 1351 plasmid:2
10281
10207
-
Ala
TGC
[ENA]
¡û
>PL171000871
CP012645
Bacteroidetes
Rufibacter tibetensis 1351 plasmid:2
10365
10289
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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