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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
Calditrichota
Bacteria
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>C171072783
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
76038
75963
-
Phe
GAA
-
¡û
>C171072739
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
284232
284316
+
Leu
CAG
-
¡û
>C171072740
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
547673
547748
+
Asn
GTT
-
¡û
>C171072782
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
662691
662618
-
Ala
CGC
-
¡û
>C171072781
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
662905
662821
-
Leu
CAA
-
¡û
>C171072741
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1051207
1051283
+
Ile
GAT
-
¡û
>C171072742
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1051444
1051517
+
Ala
TGC
-
¡û
>C171072743
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1058655
1058728
+
Thr
TGT
-
¡û
>C171072744
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1058788
1058864
+
Gly
TCC
-
¡û
>C171072745
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1058887
1058962
+
Thr
GGT
-
¡û
>C171072746
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1060378
1060452
+
Trp
CCA
-
¡û
>C171072780
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1191991
1191918
-
Glu
CTC
-
¡û
>C171072779
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1192101
1192027
-
Arg
ACG
-
¡û
>C171072778
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1192187
1192114
-
Gln
CTG
-
¡û
>C171072747
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1222185
1222259
+
Val
CAC
-
¡û
>C171072777
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1265501
1265417
-
Leu
TAG
-
¡û
>C171072748
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1393945
1394018
+
Gly
CCC
-
¡û
>C171072749
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1434458
1434532
+
Gln
TTG
-
¡û
>C171072750
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2212918
2213003
+
Leu
GAG
-
¡û
>C171072751
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2303506
2303581
+
Lys
TTT
-
¡û
>C171072776
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2384659
2384586
-
Ala
GGC
-
¡û
>C171072752
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2426108
2426181
+
Lys
CTT
-
¡û
>C171072753
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2582355
2582429
+
Pro
CGG
-
¡û
>C171072775
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2587798
2587722
-
Pro
GGG
-
¡û
>C171072774
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2879267
2879192
-
Arg
CCT
-
¡û
>C171072773
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3008906
3008818
-
Leu
TAA
-
¡û
>C171072772
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3009795
3009720
-
Cys
GCA
-
¡û
>C171072771
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3009900
3009827
-
Gly
GCC
-
¡û
>C171072770
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3108615
3108539
-
Met
CAT
-
¡û
>C171072769
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3170397
3170321
-
Val
GAC
-
¡û
>C171072768
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3170585
3170501
-
Tyr
GTA
-
¡û
>C172000110
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3171150
3171058
-
SeC
TCA
-
¡û
>C171072767
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3277230
3277154
-
Arg
CCG
-
¡û
>C171072766
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3698751
3698663
-
Ser
CGA
-
¡û
>C171072765
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3699759
3699674
-
Ser
GGA
-
¡û
>C171072754
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3806249
3806322
+
Thr
CGT
-
¡û
>C171072764
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4124178
4124087
-
Ser
GCT
-
¡û
>C171072763
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4172665
4172582
-
Ser
TGA
-
¡û
>C171072762
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4436791
4436718
-
Met
CAT
-
¡û
>C171072761
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4436905
4436829
-
Met
CAT
-
¡û
>C171072755
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4552285
4552359
+
Pro
TGG
-
¡û
>C171072756
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4552366
4552440
+
Arg
TCT
-
¡û
>C171072757
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4552449
4552524
+
His
GTG
-
¡û
>C171072758
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4552574
4552649
+
Glu
TTC
-
¡û
>C171072760
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4813545
4813468
-
Asp
GTC
-
¡û
>C171072759
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4823036
4823111
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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