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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
Chloroflexi
Bacteria
HIT:
92 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>W11112398
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
484
408
-
Val
GAC
[ENA]
¡û
>W10109961
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
484
408
-
Val
GAC
[ENA]
¡û
>W10109950
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
55452
55377
-
Ala
TGC
[ENA]
¡û
>W11112387
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
55452
55377
-
Ala
TGC
[ENA]
¡û
>W11112404
ADBO01000004
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
59270
59345
+
Val
CAC
[ENA]
¡û
>W10109967
ADBO01000004
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
59270
59345
+
Val
CAC
[ENA]
¡û
>W11112399
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
61047
61121
+
Ala
CGC
[ENA]
¡û
>W10109962
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
61047
61121
+
Ala
CGC
[ENA]
¡û
>W11112400
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
79480
79556
+
Arg
CCT
[ENA]
¡û
>W10109963
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
79480
79556
+
Arg
CCT
[ENA]
¡û
>W11112359
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
108890
108964
+
Thr
CGT
[ENA]
¡û
>W10109922
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
108890
108964
+
Thr
CGT
[ENA]
¡û
>W11112403
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
108936
108861
-
Glu
TTC
[ENA]
¡û
>W10109966
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
108936
108861
-
Glu
TTC
[ENA]
¡û
>W10109951
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
117686
117760
+
Met
CAT
[ENA]
¡û
>W11112388
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
117686
117760
+
Met
CAT
[ENA]
¡û
>W10109964
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
121202
121279
+
Pro
CGG
[ENA]
¡û
>W11112401
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
121202
121279
+
Pro
CGG
[ENA]
¡û
>W10109949
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
140685
140611
-
Met
CAT
[ENA]
¡û
>W11112386
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
140685
140611
-
Met
CAT
[ENA]
¡û
>W11112397
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
157743
157652
-
Ser
GCT
[ENA]
¡û
>W10109960
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
157743
157652
-
Ser
GCT
[ENA]
¡û
>W10109965
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
183184
183259
+
Ala
GGC
[ENA]
¡û
>W11112402
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
183184
183259
+
Ala
GGC
[ENA]
¡û
>W10109952
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211806
211882
+
Trp
CCA
[ENA]
¡û
>W11112389
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211806
211882
+
Trp
CCA
[ENA]
¡û
>W11112390
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211888
211974
+
Leu
GAG
[ENA]
¡û
>W10109953
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211888
211974
+
Leu
GAG
[ENA]
¡û
>W10109954
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211988
212062
+
Gly
GCC
[ENA]
¡û
>W11112391
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211988
212062
+
Gly
GCC
[ENA]
¡û
>W10109955
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
212100
212174
+
Cys
GCA
[ENA]
¡û
>W11112392
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
212100
212174
+
Cys
GCA
[ENA]
¡û
>W11112393
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
213113
213197
+
Leu
TAA
[ENA]
¡û
>W10109956
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
213113
213197
+
Leu
TAA
[ENA]
¡û
>W10109957
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
228977
229063
+
Leu
CAG
[ENA]
¡û
>W11112394
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
228977
229063
+
Leu
CAG
[ENA]
¡û
>W10109958
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
229069
229146
+
Arg
GCG
[ENA]
¡û
>W11112395
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
229069
229146
+
Arg
GCG
[ENA]
¡û
>W11112396
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
229157
229233
+
Val
TAC
[ENA]
¡û
>W10109959
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
229157
229233
+
Val
TAC
[ENA]
¡û
>W11112385
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
272025
271936
-
Ser
TGA
[ENA]
¡û
>W10109948
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
272025
271936
-
Ser
TGA
[ENA]
¡û
>W11112384
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
381179
381090
-
Ser
GGA
[ENA]
¡û
>W10109947
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
381179
381090
-
Ser
GGA
[ENA]
¡û
>W11112383
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
381305
381216
-
Ser
CGA
[ENA]
¡û
>W10109946
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
381305
381216
-
Ser
CGA
[ENA]
¡û
>W11112360
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
383051
383123
+
Arg
CCG
[ENA]
¡û
>W10109923
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
383051
383123
+
Arg
CCG
[ENA]
¡û
>W10109924
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
389242
389319
+
Pro
TGG
[ENA]
¡û
>W11112361
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
389242
389319
+
Pro
TGG
[ENA]
¡û
>W11112382
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
391841
391767
-
Gly
TCC
[ENA]
¡û
>W10109945
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
391841
391767
-
Gly
TCC
[ENA]
¡û
>W10109925
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
392393
392467
+
Met
CAT
[ENA]
¡û
>W11112362
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
392393
392467
+
Met
CAT
[ENA]
¡û
>W11112363
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
404515
404591
+
Arg
TCT
[ENA]
¡û
>W10109926
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
404515
404591
+
Arg
TCT
[ENA]
¡û
>W11112381
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
414238
414154
-
Leu
TAG
[ENA]
¡û
>W10109944
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
414238
414154
-
Leu
TAG
[ENA]
¡û
>W10109927
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
416686
416762
+
Pro
GGG
[ENA]
¡û
>W11112364
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
416686
416762
+
Pro
GGG
[ENA]
¡û
>W10109928
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456283
456358
+
Phe
GAA
[ENA]
¡û
>W11112365
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456283
456358
+
Phe
GAA
[ENA]
¡û
>W11112366
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456433
456519
+
Leu
CAA
[ENA]
¡û
>W10109929
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456433
456519
+
Leu
CAA
[ENA]
¡û
>W10109930
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456550
456623
+
Gln
TTG
[ENA]
¡û
>W11112367
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456550
456623
+
Gln
TTG
[ENA]
¡û
>W10109931
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456634
456708
+
Asn
GTT
[ENA]
¡û
>W11112368
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456634
456708
+
Asn
GTT
[ENA]
¡û
>W11112380
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
463677
463604
-
Lys
CTT
[ENA]
¡û
>W10109943
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
463677
463604
-
Lys
CTT
[ENA]
¡û
>W10109932
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
497608
497682
+
Gly
CCC
[ENA]
¡û
>W11112369
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
497608
497682
+
Gly
CCC
[ENA]
¡û
>W10109942
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
518973
518898
-
Lys
TTT
[ENA]
¡û
>W11112379
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
518973
518898
-
Lys
TTT
[ENA]
¡û
>W11112378
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
565412
565337
-
Arg
TCG
[ENA]
¡û
>W10109941
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
565412
565337
-
Arg
TCG
[ENA]
¡û
>W11112377
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
565503
565428
-
His
GTG
[ENA]
¡û
>W10109940
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
565503
565428
-
His
GTG
[ENA]
¡û
>W10109939
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601226
601151
-
Thr
GGT
[ENA]
¡û
>W11112376
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601226
601151
-
Thr
GGT
[ENA]
¡û
>W10109938
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601373
601288
-
Tyr
GTA
[ENA]
¡û
>W11112375
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601373
601288
-
Tyr
GTA
[ENA]
¡û
>W11112374
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601485
601413
-
Thr
TGT
[ENA]
¡û
>W10109937
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601485
601413
-
Thr
TGT
[ENA]
¡û
>W10109936
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
619112
619036
-
Ile
GAT
[ENA]
¡û
>W11112373
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
619112
619036
-
Ile
GAT
[ENA]
¡û
>W10109935
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
622377
622301
-
Glu
CTC
[ENA]
¡û
>W11112372
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
622377
622301
-
Glu
CTC
[ENA]
¡û
>W11112371
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
622463
622390
-
Gln
CTG
[ENA]
¡û
>W10109934
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
622463
622390
-
Gln
CTG
[ENA]
¡û
>W10109933
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
642148
642224
+
Asp
GTC
[ENA]
¡û
>W11112370
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
642148
642224
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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