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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Cryptophyta
HIT:
61 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>CHL090100296
AF041468
Cryptophyta
Guillardia theta
86
5
-
Tyr
GTA
[ENA]
¡û
>CHL090100270
AF041468
Cryptophyta
Guillardia theta
3316
3388
+
Phe
GAA
[ENA]
¡û
>CHL090100271
AF041468
Cryptophyta
Guillardia theta
5361
5433
+
Trp
CCA
[ENA]
¡û
>CHL090100295
AF041468
Cryptophyta
Guillardia theta
9296
9222
-
His
GTG
[ENA]
¡û
>CHL090100294
AF041468
Cryptophyta
Guillardia theta
9883
9810
-
Gln
TTG
[ENA]
¡û
>CHL090100293
AF041468
Cryptophyta
Guillardia theta
9995
9922
-
Arg
ACG
[ENA]
¡û
>CHL090100272
AF041468
Cryptophyta
Guillardia theta
18759
18832
+
Ile
GAT
[ENA]
¡û
>CHL090100273
AF041468
Cryptophyta
Guillardia theta
18835
18907
+
Ala
TGC
[ENA]
¡û
>CHL090100292
AF041468
Cryptophyta
Guillardia theta
27515
27444
-
Asn
GTT
[ENA]
¡û
>CHL090100274
AF041468
Cryptophyta
Guillardia theta
27625
27707
+
Leu
TAG
[ENA]
¡û
>CHL090100291
AF041468
Cryptophyta
Guillardia theta
40566
40494
-
Ala
TGC
[ENA]
¡û
>CHL090100290
AF041468
Cryptophyta
Guillardia theta
40642
40569
-
Ile
GAT
[ENA]
¡û
>CHL090100289
AF041468
Cryptophyta
Guillardia theta
43811
43739
-
Arg
TCT
[ENA]
¡û
>CHL090100288
AF041468
Cryptophyta
Guillardia theta
44134
44062
-
Thr
TGT
[ENA]
¡û
>CHL090100275
AF041468
Cryptophyta
Guillardia theta
49322
49394
+
Cys
GCA
[ENA]
¡û
>CHL090100276
AF041468
Cryptophyta
Guillardia theta
49414
49496
+
Leu
TAA
[ENA]
¡û
>CHL090100287
AF041468
Cryptophyta
Guillardia theta
50163
50075
-
Met
CAT
[ENA]
¡û
>CHL090100286
AF041468
Cryptophyta
Guillardia theta
50651
50579
-
Arg
CCG
[ENA]
¡û
>CHL090100277
AF041468
Cryptophyta
Guillardia theta
53999
54072
+
Pro
TGG
[ENA]
¡û
>CHL090200012
AF041468
Cryptophyta
Guillardia theta
54724
54796
+
Glu
TTC
[ENA]
¡û
>CHL090100285
AF041468
Cryptophyta
Guillardia theta
54972
54901
-
Lys
TTT
[ENA]
¡û
>CHL090100284
AF041468
Cryptophyta
Guillardia theta
57218
57147
-
Gly
TCC
[ENA]
¡û
>CHL090100283
AF041468
Cryptophyta
Guillardia theta
60938
60858
-
Leu
CAA
[ENA]
¡û
>CHL090100278
AF041468
Cryptophyta
Guillardia theta
89029
89104
+
Met
CAT
[ENA]
¡û
>CHL090100279
AF041468
Cryptophyta
Guillardia theta
89671
89758
+
Ser
TGA
[ENA]
¡û
>CHL090100282
AF041468
Cryptophyta
Guillardia theta
89920
89848
-
Gly
GCC
[ENA]
¡û
>CHL090100281
AF041468
Cryptophyta
Guillardia theta
119071
118996
-
Asp
GTC
[ENA]
¡û
>CHL090100280
AF041468
Cryptophyta
Guillardia theta
119234
119146
-
Ser
GCT
[ENA]
¡û
>CHL090200013
AF041468
Cryptophyta
Guillardia theta
119417
119345
-
Met
CAT
[ENA]
¡û
>CHL090200014
AF041468
Cryptophyta
Guillardia theta
43939
43868
-
Leu
CAA
[ENA]
¡û
>CHL090103052
EF508371
Cryptophyta
Rhodomonas salina
86
5
-
Tyr
GTA
[ENA]
¡û
>CHL090103025
EF508371
Cryptophyta
Rhodomonas salina
3402
3474
+
Phe
GAA
[ENA]
¡û
>CHL090103026
EF508371
Cryptophyta
Rhodomonas salina
5422
5510
+
Ser
GGA
[ENA]
¡û
>CHL090103027
EF508371
Cryptophyta
Rhodomonas salina
5601
5674
+
Trp
CCA
[ENA]
¡û
>CHL090103051
EF508371
Cryptophyta
Rhodomonas salina
9568
9495
-
His
GTG
[ENA]
¡û
>CHL090103050
EF508371
Cryptophyta
Rhodomonas salina
10215
10144
-
Gln
TTG
[ENA]
¡û
>CHL090103049
EF508371
Cryptophyta
Rhodomonas salina
10475
10402
-
Arg
ACG
[ENA]
¡û
>CHL090103028
EF508371
Cryptophyta
Rhodomonas salina
21144
21217
+
Ile
GAT
[ENA]
¡û
>CHL090103029
EF508371
Cryptophyta
Rhodomonas salina
21219
21293
+
Ala
TGC
[ENA]
¡û
>CHL090103048
EF508371
Cryptophyta
Rhodomonas salina
30849
30778
-
Asn
GTT
[ENA]
¡û
>CHL090103030
EF508371
Cryptophyta
Rhodomonas salina
31010
31092
+
Leu
TAG
[ENA]
¡û
>CHL090103047
EF508371
Cryptophyta
Rhodomonas salina
44203
44129
-
Ala
TGC
[ENA]
¡û
>CHL090103046
EF508371
Cryptophyta
Rhodomonas salina
44278
44205
-
Ile
GAT
[ENA]
¡û
>CHL090103045
EF508371
Cryptophyta
Rhodomonas salina
47506
47434
-
Arg
TCT
[ENA]
¡û
>CHL090103044
EF508371
Cryptophyta
Rhodomonas salina
47623
47551
-
Val
TAC
[ENA]
¡û
>CHL090103043
EF508371
Cryptophyta
Rhodomonas salina
48986
48914
-
Thr
TGT
[ENA]
¡û
>CHL090103031
EF508371
Cryptophyta
Rhodomonas salina
54728
54798
+
Cys
GCA
[ENA]
¡û
>CHL090103032
EF508371
Cryptophyta
Rhodomonas salina
54820
54903
+
Leu
TAA
[ENA]
¡û
>CHL090103042
EF508371
Cryptophyta
Rhodomonas salina
55643
55558
-
Met
CAT
[ENA]
¡û
>CHL090103041
EF508371
Cryptophyta
Rhodomonas salina
56152
56078
-
Arg
CCG
[ENA]
¡û
>CHL090103033
EF508371
Cryptophyta
Rhodomonas salina
59694
59767
+
Pro
TGG
[ENA]
¡û
>CHL090200139
EF508371
Cryptophyta
Rhodomonas salina
60443
60515
+
Glu
TTC
[ENA]
¡û
>CHL090103040
EF508371
Cryptophyta
Rhodomonas salina
60728
60657
-
Lys
TTT
[ENA]
¡û
>CHL090103039
EF508371
Cryptophyta
Rhodomonas salina
64233
64163
-
Gly
TCC
[ENA]
¡û
>CHL090103038
EF508371
Cryptophyta
Rhodomonas salina
68330
68248
-
Leu
CAA
[ENA]
¡û
>CHL090103034
EF508371
Cryptophyta
Rhodomonas salina
98282
98355
+
Met
CAT
[ENA]
¡û
>CHL090103035
EF508371
Cryptophyta
Rhodomonas salina
98928
99015
+
Ser
TGA
[ENA]
¡û
>CHL090103037
EF508371
Cryptophyta
Rhodomonas salina
99169
99097
-
Gly
GCC
[ENA]
¡û
>CHL090200141
EF508371
Cryptophyta
Rhodomonas salina
133019
132944
-
Asp
GTC
[ENA]
¡û
>CHL090103036
EF508371
Cryptophyta
Rhodomonas salina
133164
133076
-
Ser
GCT
[ENA]
¡û
>CHL090200140
EF508371
Cryptophyta
Rhodomonas salina
133277
133205
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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