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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
DSM 25025
Bacteria
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>W2010724800
JACIDP010000015
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
243
154
-
Ser
TGA
[ENA]
¡û
>W2010724801
JACIDP010000017
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1992
2068
+
Ile
GAT
[ENA]
¡û
>W2010724802
JACIDP010000017
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
2073
2148
+
Ala
TGC
[ENA]
¡û
>W2010724775
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
2301
2226
-
Thr
CGT
[ENA]
¡û
>W2010724796
JACIDP010000007
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
3901
3825
-
His
GTG
[ENA]
¡û
>W2010724798
JACIDP010000010
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
10174
10085
-
Ser
GGA
[ENA]
¡û
>W2010724799
JACIDP010000015
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
17330
17405
+
Lys
TTT
[ENA]
¡û
>W2010724797
JACIDP010000008
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
32847
32772
-
Ile2
CAT
[ENA]
¡û
>W2010724758
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
70818
70894
+
Arg
ACG
[ENA]
¡û
>W2010724793
JACIDP010000006
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
79769
79853
+
Leu
CAA
[ENA]
¡û
>W2010724791
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
100492
100416
-
Asp
GTC
[ENA]
¡û
>W2010724781
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
100870
100945
+
Val
TAC
[ENA]
¡û
>W2010724780
JACIDP010000003
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
132647
132571
-
Arg
CCT
[ENA]
¡û
>W2010724774
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
136610
136534
-
Arg
CCG
[ENA]
¡û
>W2010724759
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
145619
145695
+
fMet
CAT
[ENA]
¡û
>W2010724790
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
160475
160392
-
Leu
TAG
[ENA]
¡û
>W2010724794
JACIDP010000006
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
161575
161649
+
Val
GAC
[ENA]
¡û
>W2010724789
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
193092
193008
-
Leu
GAG
[ENA]
¡û
>W2010724773
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
194988
194913
-
Phe
GAA
[ENA]
¡û
>W2010724788
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
235414
235339
-
Trp
CCA
[ENA]
¡û
>W2010724792
JACIDP010000005
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
238188
238262
+
Thr
GGT
[ENA]
¡û
>W2010724787
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
239911
239838
-
Gly
TCC
[ENA]
¡û
>W2010724786
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
240017
239933
-
Tyr
GTA
[ENA]
¡û
>W2010724782
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
245971
246045
+
Thr
TGT
[ENA]
¡û
>W2010724785
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
299727
299652
-
Arg
TCT
[ENA]
¡û
>W2010724784
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
300144
300068
-
Pro
TGG
[ENA]
¡û
>W2010724783
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
303458
303532
+
Glu
TTC
[ENA]
¡û
>W2010724776
JACIDP010000002
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
337612
337686
+
Gly
CCC
[ENA]
¡û
>W2010724795
JACIDP010000006
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
344285
344369
+
Leu
CAG
[ENA]
¡û
>W2010724772
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
349700
349611
-
Ser
CGA
[ENA]
¡û
>W2010724778
JACIDP010000003
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
426909
426983
+
Gly
GCC
[ENA]
¡û
>W2010724779
JACIDP010000003
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
476747
476822
+
Ala
GGC
[ENA]
¡û
>W2010724760
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
568675
568749
+
Glu
CTC
[ENA]
¡û
>W2010724771
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
581014
580938
-
Met
CAT
[ENA]
¡û
>W2010724777
JACIDP010000002
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
609969
610044
+
Ala
CGC
[ENA]
¡û
>W2010724770
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
759445
759356
-
Ser
GCT
[ENA]
¡û
>W2010724769
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
873946
873872
-
Val
CAC
[ENA]
¡û
>W2010724768
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
924683
924610
-
Gln
CTG
[ENA]
¡û
>W2010724767
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1023779
1023705
-
Gln
TTG
[ENA]
¡û
>W2010724761
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1023921
1023997
+
Pro
CGG
[ENA]
¡û
>W2010724762
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1078902
1078977
+
Lys
CTT
[ENA]
¡û
>W2010724766
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1098383
1098307
-
Pro
GGG
[ENA]
¡û
>W2010724765
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1126367
1126283
-
Leu
TAA
[ENA]
¡û
>W2010724764
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1138248
1138175
-
Cys
GCA
[ENA]
¡û
>W2010724763
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1138937
1139011
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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