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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
DSM 25026
Bacteria
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>W2010724842
JACIDQ010000005
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
638
562
-
Arg
CCG
[ENA]
¡û
>W2010724828
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
2387
2312
-
Thr
CGT
[ENA]
¡û
>W2010724848
JACIDQ010000031
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
4323
4248
-
Ala
TGC
[ENA]
¡û
>W2010724847
JACIDQ010000031
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
4471
4395
-
Ile
GAT
[ENA]
¡û
>W2010724837
JACIDQ010000005
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
6960
7044
+
Leu
CAG
[ENA]
¡û
>W2010724843
JACIDQ010000007
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
8669
8745
+
fMet
CAT
[ENA]
¡û
>W2010724846
JACIDQ010000026
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
12695
12606
-
Ser
TGA
[ENA]
¡û
>W2010724803
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
18999
19074
+
Lys
TTT
[ENA]
¡û
>W2010724845
JACIDQ010000013
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
42961
42885
-
Arg
CCT
[ENA]
¡û
>W2010724841
JACIDQ010000005
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
47522
47448
-
Val
GAC
[ENA]
¡û
>W2010724815
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
87038
86954
-
Leu
GAG
[ENA]
¡û
>W2010724814
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
129023
128948
-
Trp
CCA
[ENA]
¡û
>W2010724813
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
133038
132965
-
Gly
TCC
[ENA]
¡û
>W2010724812
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
133137
133053
-
Tyr
GTA
[ENA]
¡û
>W2010724844
JACIDQ010000009
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
138782
138858
+
Arg
ACG
[ENA]
¡û
>W2010724804
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
139264
139338
+
Thr
TGT
[ENA]
¡û
>W2010724816
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
170071
170145
+
Asn
GTT
[ENA]
¡û
>W2010724817
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
171403
171476
+
Cys
GCA
[ENA]
¡û
>W2010724805
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
182520
182603
+
Leu
TAA
[ENA]
¡û
>W2010724818
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
204010
204093
+
Leu
TAG
[ENA]
¡û
>W2010724838
JACIDQ010000005
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
212699
212774
+
Lys
CTT
[ENA]
¡û
>W2010724836
JACIDQ010000004
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
216261
216186
-
Ala
GGC
[ENA]
¡û
>W2010724827
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
239008
238919
-
Ser
GCT
[ENA]
¡û
>W2010724840
JACIDQ010000005
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
271535
271449
-
Leu
CAA
[ENA]
¡û
>W2010724835
JACIDQ010000004
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
284658
284584
-
Gly
GCC
[ENA]
¡û
>W2010724833
JACIDQ010000003
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
288934
288860
-
Gln
TTG
[ENA]
¡û
>W2010724829
JACIDQ010000003
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
289075
289151
+
Pro
CGG
[ENA]
¡û
>W2010724830
JACIDQ010000003
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
292964
293038
+
Ile2
CAT
[ENA]
¡û
>W2010724819
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
320520
320596
+
Pro
GGG
[ENA]
¡û
>W2010724826
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
327502
327428
-
Val
CAC
[ENA]
¡û
>W2010724839
JACIDQ010000005
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
372757
372833
+
His
GTG
[ENA]
¡û
>W2010724834
JACIDQ010000004
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
392843
392768
-
Ala
CGC
[ENA]
¡û
>W2010724825
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
426813
426739
-
Glu
TTC
[ENA]
¡û
>W2010724820
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
430099
430175
+
Pro
TGG
[ENA]
¡û
>W2010724821
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
430542
430617
+
Arg
TCT
[ENA]
¡û
>W2010724806
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
433821
433897
+
Met
CAT
[ENA]
¡û
>W2010724811
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
447800
447726
-
Glu
CTC
[ENA]
¡û
>W2010724824
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
460629
460554
-
Val
TAC
[ENA]
¡û
>W2010724822
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
460910
460986
+
Asp
GTC
[ENA]
¡û
>W2010724823
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
461035
461111
+
Asp
GTC
[ENA]
¡û
>W2010724832
JACIDQ010000003
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
484403
484329
-
Gly
CCC
[ENA]
¡û
>W2010724831
JACIDQ010000003
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
498348
498437
+
Ser
GGA
[ENA]
¡û
>W2010724807
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
600717
600790
+
Gln
CTG
[ENA]
¡û
>W2010724810
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
818990
818901
-
Ser
CGA
[ENA]
¡û
>W2010724809
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
1010933
1010858
-
Phe
GAA
[ENA]
¡û
>W2010724808
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
1011097
1011171
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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