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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
Deltaproteobacteria
Bacteria
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>C181187239
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
121980
122053
+
Thr
CGT
-
¡û
>C181187240
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
367299
367373
+
Phe
GAA
-
¡û
>C181187290
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
413013
412929
-
Leu
CAG
-
¡û
>C181187289
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1050111
1050037
-
Lys
TTT
-
¡û
>C181187288
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1050289
1050214
-
Glu
TTC
-
¡û
>C181187287
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1050411
1050337
-
Lys
CTT
-
¡û
>C181187286
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1050590
1050515
-
Glu
TTC
-
¡û
>C181187285
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1050664
1050591
-
Lys
TTT
-
¡û
>C181187241
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1160643
1160726
+
Leu
CAA
-
¡û
>C181187242
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1274766
1274840
+
Pro
CGG
-
¡û
>C181187243
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1446958
1447030
+
Gln
CTG
-
¡û
>C181187244
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1447039
1447113
+
Glu
CTC
-
¡û
>C181187245
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1798984
1799056
+
Gly
GCC
-
¡û
>C181187246
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1799117
1799188
+
Gly
GCC
-
¡û
>C181187247
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
1799251
1799322
+
Gly
GCC
-
¡û
>C181187284
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2044377
2044303
-
Pro
GGG
-
¡û
>C181187248
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2161992
2162066
+
Met
CAT
-
¡û
>C181187249
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2178211
2178284
+
Ala
GGC
-
¡û
>C181187250
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2178322
2178395
+
Ala
GGC
-
¡û
>C181187283
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2253367
2253294
-
Asn
GTT
-
¡û
>C181187282
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2484852
2484765
-
Ser
GGA
-
¡û
>C181187281
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2484942
2484855
-
Ser
CGA
-
¡û
>C181187280
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2485720
2485647
-
Arg
ACG
-
¡û
>C181187279
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2486057
2485968
-
Ser
GCT
-
¡û
>C181187278
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2486298
2486211
-
Ser
TGA
-
¡û
>C181187277
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
2700948
2700875
-
Arg
CCT
-
¡û
>C181187276
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3045396
3045326
-
Gln
TTG
-
¡û
>C181187251
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3045606
3045678
+
Val
CAC
-
¡û
>C181187252
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3167755
3167827
+
Leu
TAA
-
¡û
>C181187253
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3204497
3204570
+
Arg
CCG
-
¡û
>C181187275
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3307889
3307817
-
Asn
GTT
-
¡û
>C181187274
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3330687
3330617
-
Cys
GCA
-
¡û
>C181187273
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3461952
3461880
-
Met
CAT
-
¡û
>C181187272
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3479317
3479243
-
Asp
GTC
-
¡û
>C181187271
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3479445
3479371
-
Asp
GTC
-
¡û
>C181187270
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3479600
3479529
-
Val
TAC
-
¡û
>C181187269
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3486859
3486775
-
Leu
TAG
-
¡û
>C181187268
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3487014
3486940
-
Arg
TCG
-
¡û
>C181187267
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3487169
3487095
-
His
GTG
-
¡û
>C181187266
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3738470
3738397
-
Ala
CGC
-
¡û
>C183003483
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3888611
3888540
-
Val
GAC
-
¡û
>C183003482
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
3888805
3888734
-
Val
GAC
-
¡û
>C181187265
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4130609
4130536
-
Ala
TGC
-
¡û
>C181187264
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4130757
4130683
-
Ile
GAT
-
¡û
>C181187263
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4239871
4239797
-
Met
CAT
-
¡û
>C181187262
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4239990
4239917
-
Met
CAT
-
¡û
>C181187254
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4707529
4707615
+
Leu
AAG
-
¡û
>C181187255
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4762775
4762847
+
Thr
TGT
-
¡û
>C181187256
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4762884
4762966
+
Tyr
GTA
-
¡û
>C181187257
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4763038
4763110
+
Gly
TCC
-
¡û
>C181187258
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4763268
4763341
+
Thr
GGT
-
¡û
>C181187259
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4764803
4764877
+
Trp
CCA
-
¡û
>C181187261
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4983682
4983608
-
Arg
TCT
-
¡û
>C181187260
CP030032
Deltaproteobacteria
Bradymonas sediminis FA350 [CP030032]
4983843
4983769
-
Pro
TGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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