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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
Epsilonproteobacteria
Bacteria
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>W1510610258
CUNT01000002
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
4987
4911
-
Ile
GAT
[ENA]
¡û
>W1510610257
CUNT01000002
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
5071
4996
-
Ala
TGC
[ENA]
¡û
>W1510610280
CUNT01000009
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
17272
17346
+
Glu
TTC
[ENA]
¡û
>W1510610241
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
32802
32877
+
Lys
TTT
[ENA]
¡û
>W1510610242
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
32890
32965
+
Val
TAC
[ENA]
¡û
>W1510610243
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
32987
33063
+
Asp
GTC
[ENA]
¡û
>W1510610244
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
33067
33142
+
Lys
TTT
[ENA]
¡û
>W1510610245
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
33156
33231
+
Arg
TCT
[ENA]
¡û
>W1510610246
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
33240
33315
+
Val
TAC
[ENA]
¡û
>W1510610247
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
33337
33413
+
Asp
GTC
[ENA]
¡û
>W1510610259
CUNT01000003
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
34926
35001
+
Thr
TGT
[ENA]
¡û
>W1510610260
CUNT01000003
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
35062
35147
+
Tyr
GTA
[ENA]
¡û
>W1510610261
CUNT01000003
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
35154
35230
+
Gly
TCC
[ENA]
¡û
>W1510610262
CUNT01000003
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
35326
35400
+
Thr
GGT
[ENA]
¡û
>W1510610263
CUNT01000003
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
36883
36958
+
Trp
CCA
[ENA]
¡û
>W1510610252
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
38217
38131
-
Leu
CAA
[ENA]
¡û
>W1510610277
CUNT01000007
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
49132
49206
+
Gln
TTG
[ENA]
¡û
>W1510610278
CUNT01000007
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
49238
49313
+
Met
CAT
[ENA]
¡û
>W1510610279
CUNT01000007
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
49605
49530
-
Phe
GAA
[ENA]
¡û
>W1510610276
CUNT01000005
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
52691
52616
-
Val
GAC
[ENA]
¡û
>W1510610275
CUNT01000005
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
52768
52693
-
Ala
GGC
[ENA]
¡û
>W1510610274
CUNT01000005
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
54032
53945
-
Ser
GGA
[ENA]
¡û
>W1510610268
CUNT01000005
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
54137
54213
+
Met
CAT
[ENA]
¡û
>W1510610251
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
58134
58060
-
Gly
GCC
[ENA]
¡û
>W1510610264
CUNT01000003
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
61144
61220
+
Arg
CCT
[ENA]
¡û
>W1510610266
CUNT01000004
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
66262
66355
+
SeC
TCA
[ENA]
¡û
>W1510610269
CUNT01000005
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
85080
85157
+
Pro
TGG
[ENA]
¡û
>W1510610270
CUNT01000005
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
85182
85258
+
His
GTG
[ENA]
¡û
>W1510610271
CUNT01000005
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
85263
85339
+
Arg
TCG
[ENA]
¡û
>W1510610272
CUNT01000005
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
85354
85430
+
Arg
TCT
[ENA]
¡û
>W1510610273
CUNT01000005
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
85436
85520
+
Leu
TAG
[ENA]
¡û
>W1510610248
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
105190
105275
+
Leu
GAG
[ENA]
¡û
>W1510610265
CUNT01000003
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
124922
124846
-
Met
CAT
[ENA]
¡û
>W1510610249
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
138212
138288
+
Arg
GCG
[ENA]
¡û
>W1510610267
CUNT01000004
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
201864
201774
-
Ser
GCT
[ENA]
¡û
>W1510610253
CUNT01000002
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
232936
233010
+
Gly
GCC
[ENA]
¡û
>W1510610254
CUNT01000002
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
233020
233108
+
Leu
TAA
[ENA]
¡û
>W1510610255
CUNT01000002
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
233129
233202
+
Cys
GCA
[ENA]
¡û
>W1510610256
CUNT01000002
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
233234
233321
+
Ser
TGA
[ENA]
¡û
>W1510610250
CUNT01000001
Epsilonproteobacteria
Campylobacter coli OXC6416 [CUNT] OXC6416 [CUNT]
381243
381169
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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