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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
High saltern (Pond 5) microbes attempt 1 (SRP001107)
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1013792
SRR023631.12408
High saltern (Pond 5) microbes attempt 1 (SRP001107)
27
101
+
Glu
TTC
[SRA]
>SRA1013793
SRR023631.13001
High saltern (Pond 5) microbes attempt 1 (SRP001107)
99
23
-
Cys
GCA
[SRA]
>SRA1013794
SRR023631.13434
High saltern (Pond 5) microbes attempt 1 (SRP001107)
99
23
-
Cys
GCA
[SRA]
>SRA1013795
SRR023631.16309
High saltern (Pond 5) microbes attempt 1 (SRP001107)
1
74
+
Phe
GAA
[SRA]
>SRA1013796
SRR023631.16467
High saltern (Pond 5) microbes attempt 1 (SRP001107)
2
75
+
Phe
GAA
[SRA]
>SRA1013797
SRR023631.22153
High saltern (Pond 5) microbes attempt 1 (SRP001107)
86
11
-
Arg
CCG
[SRA]
>SRA1013798
SRR023631.23137
High saltern (Pond 5) microbes attempt 1 (SRP001107)
4
77
+
His
GTG
[SRA]
>SRA1013799
SRR023631.30155
High saltern (Pond 5) microbes attempt 1 (SRP001107)
80
9
-
Ala
TGC
[SRA]
>SRA1013800
SRR023631.32154
High saltern (Pond 5) microbes attempt 1 (SRP001107)
109
34
-
Cys
GCA
[SRA]
>SRA1013801
SRR023631.32603
High saltern (Pond 5) microbes attempt 1 (SRP001107)
51
123
+
Arg
CCT
[SRA]
>SRA1013802
SRR023631.35141
High saltern (Pond 5) microbes attempt 1 (SRP001107)
12
82
+
Pro
GGG
[SRA]
>SRA1013789
SRR023631.3575
High saltern (Pond 5) microbes attempt 1 (SRP001107)
78
7
-
Pro
GGG
[SRA]
>SRA1013803
SRR023631.43020
High saltern (Pond 5) microbes attempt 1 (SRP001107)
25
97
+
Gln
CTG
[SRA]
>SRA1013804
SRR023631.48789
High saltern (Pond 5) microbes attempt 1 (SRP001107)
20
96
+
Lys
CTT
[SRA]
>SRA1013805
SRR023631.50946
High saltern (Pond 5) microbes attempt 1 (SRP001107)
101
28
-
Thr
TGT
[SRA]
>SRA1013806
SRR023631.53860
High saltern (Pond 5) microbes attempt 1 (SRP001107)
78
7
-
Pro
GGG
[SRA]
>SRA1013807
SRR023631.56685
High saltern (Pond 5) microbes attempt 1 (SRP001107)
85
9
-
Pro
TGG
[SRA]
>SRA1013808
SRR023631.57401
High saltern (Pond 5) microbes attempt 1 (SRP001107)
2
75
+
Phe
GAA
[SRA]
>SRA1013809
SRR023631.62548
High saltern (Pond 5) microbes attempt 1 (SRP001107)
83
12
-
Ala
TGC
[SRA]
>SRA1013810
SRR023631.64192
High saltern (Pond 5) microbes attempt 1 (SRP001107)
87
14
-
Arg
TCT
[SRA]
>SRA1013811
SRR023631.66802
High saltern (Pond 5) microbes attempt 1 (SRP001107)
22
92
+
Gly
GCC
[SRA]
>SRA1013812
SRR023631.66991
High saltern (Pond 5) microbes attempt 1 (SRP001107)
110
34
-
Met
CAT
[SRA]
>SRA1013813
SRR023631.67395
High saltern (Pond 5) microbes attempt 1 (SRP001107)
22
92
+
Gly
GCC
[SRA]
>SRA1013814
SRR023631.70401
High saltern (Pond 5) microbes attempt 1 (SRP001107)
28
102
+
Ala
GGC
[SRA]
>SRA1013790
SRR023631.7286
High saltern (Pond 5) microbes attempt 1 (SRP001107)
84
8
-
Arg
CCG
[SRA]
>SRA1013815
SRR023631.77806
High saltern (Pond 5) microbes attempt 1 (SRP001107)
41
116
+
Val
GAC
[SRA]
>SRA1013816
SRR023631.81342
High saltern (Pond 5) microbes attempt 1 (SRP001107)
1
74
+
Phe
GAA
[SRA]
>SRA1013817
SRR023631.88232
High saltern (Pond 5) microbes attempt 1 (SRP001107)
101
28
-
Thr
TGT
[SRA]
>SRA1013791
SRR023631.8888
High saltern (Pond 5) microbes attempt 1 (SRP001107)
16
100
+
Leu
CAG
[SRA]
>SRA1013818
SRR023631.88910
High saltern (Pond 5) microbes attempt 1 (SRP001107)
20
96
+
Lys
CTT
[SRA]
>SRA1013819
SRR023631.89134
High saltern (Pond 5) microbes attempt 1 (SRP001107)
85
9
-
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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