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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
Hot springs metagenome ctg_1106426165452
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV09004235
ADKL01000029
Hot springs metagenome ctg_1106426165452
2568
2645
+
Gly
TCC
[ENA]
¡û
>ENV09004236
ADKL01000047
Hot springs metagenome ctg_1106426165452
676
761
+
Ser
TGA
[ENA]
¡û
>ENV09004237
ADKL01000192
Hot springs metagenome ctg_1106426165452
3391
3305
-
Leu
GAG
[ENA]
¡û
>ENV09004238
ADKL01000207
Hot springs metagenome ctg_1106426165452
450
536
+
Ser
GGA
[ENA]
¡û
>ENV09004239
ADKL01000280
Hot springs metagenome ctg_1106426165452
789
863
+
Val
GAC
[ENA]
¡û
>ENV09004240
ADKL01000352
Hot springs metagenome ctg_1106426165452
1078
1002
-
Trp
CCA
[ENA]
¡û
>ENV09004241
ADKL01000355
Hot springs metagenome ctg_1106426165452
10632
10708
+
Pro
TGG
[ENA]
¡û
>ENV09004242
ADKL01000413
Hot springs metagenome ctg_1106426165452
1549
1475
-
Asp
GTC
[ENA]
¡û
>ENV09004243
ADKL01000479
Hot springs metagenome ctg_1106426165452
17804
17728
-
Val
TAC
[ENA]
¡û
>ENV09004244
ADKL01000484
Hot springs metagenome ctg_1106426165452
6936
7022
+
Ser
GGA
[ENA]
¡û
>ENV09004245
ADKL01000484
Hot springs metagenome ctg_1106426165452
7117
7193
+
Asp
GTC
[ENA]
¡û
>ENV09004246
ADKL01000484
Hot springs metagenome ctg_1106426165452
15520
15427
-
Tyr
GTA
[ENA]
¡û
>ENV09004247
ADKL01000492
Hot springs metagenome ctg_1106426165452
17180
17103
-
Gly
GCC
[ENA]
¡û
>ENV09004248
ADKL01000499
Hot springs metagenome ctg_1106426165452
35151
35076
-
His
GTG
[ENA]
¡û
>ENV09004249
ADKL01000501
Hot springs metagenome ctg_1106426165452
1906
1831
-
Val
CAC
[ENA]
¡û
>ENV09004250
ADKL01000502
Hot springs metagenome ctg_1106426165452
15973
15897
-
Arg
CCG
[ENA]
¡û
>ENV09004251
ADKL01000505
Hot springs metagenome ctg_1106426165452
2683
2758
+
Asn
GTT
[ENA]
¡û
>ENV09004252
ADKL01000507
Hot springs metagenome ctg_1106426165452
31854
31779
-
Arg
GCG
[ENA]
¡û
>ENV09004254
ADKL01000510
Hot springs metagenome ctg_1106426165452
8213
8138
-
Gln
TTG
[ENA]
¡û
>ENV09004253
ADKL01000510
Hot springs metagenome ctg_1106426165452
8460
8387
-
Gln
CTG
[ENA]
¡û
>ENV09004255
ADKL01000511
Hot springs metagenome ctg_1106426165452
10515
10590
+
Arg
TCG
[ENA]
¡û
>ENV09004256
ADKL01000512
Hot springs metagenome ctg_1106426165452
19724
19809
+
Ser
TGA
[ENA]
¡û
>ENV09004261
ADKL01000514
Hot springs metagenome ctg_1106426165452
3678
3602
-
Ala
CGC
[ENA]
¡û
>ENV09004260
ADKL01000514
Hot springs metagenome ctg_1106426165452
10512
10434
-
Pro
CGG
[ENA]
¡û
>ENV09004257
ADKL01000514
Hot springs metagenome ctg_1106426165452
11645
11722
+
Ala
TGC
[ENA]
¡û
>ENV09004258
ADKL01000514
Hot springs metagenome ctg_1106426165452
11863
11951
+
Undet
???
[ENA]
¡û
>ENV09004259
ADKL01000514
Hot springs metagenome ctg_1106426165452
32780
32857
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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