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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
Hot springs metagenome ctg_1106445177583
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV09004206
ADKK01000023
Hot springs metagenome ctg_1106445177583
2414
2505
+
Ser
GCT
[ENA]
¡û
>ENV09004207
ADKK01000048
Hot springs metagenome ctg_1106445177583
1607
1533
-
Arg
ACG
[ENA]
¡û
>ENV09004208
ADKK01000086
Hot springs metagenome ctg_1106445177583
8743
8670
-
Pro
GGG
[ENA]
¡û
>ENV09004209
ADKK01000143
Hot springs metagenome ctg_1106445177583
13370
13444
+
Arg
CCT
[ENA]
¡û
>ENV09004210
ADKK01000156
Hot springs metagenome ctg_1106445177583
184
259
+
Met
CAT
[ENA]
¡û
>ENV09004211
ADKK01000159
Hot springs metagenome ctg_1106445177583
356
429
+
Lys
TTT
[ENA]
¡û
>ENV09004212
ADKK01000159
Hot springs metagenome ctg_1106445177583
439
515
+
Glu
TTC
[ENA]
¡û
>ENV09004213
ADKK01000162
Hot springs metagenome ctg_1106445177583
2466
2391
-
Trp
CCA
[ENA]
¡û
>ENV09004214
ADKK01000164
Hot springs metagenome ctg_1106445177583
1199
1125
-
Arg
CCG
[ENA]
¡û
>ENV09004215
ADKK01000176
Hot springs metagenome ctg_1106445177583
35710
35784
+
Thr
TGT
[ENA]
¡û
>ENV09004216
ADKK01000176
Hot springs metagenome ctg_1106445177583
35799
35883
+
Tyr
GTA
[ENA]
¡û
>ENV09004217
ADKK01000176
Hot springs metagenome ctg_1106445177583
35893
35966
+
Gly
TCC
[ENA]
¡û
>ENV09004218
ADKK01000176
Hot springs metagenome ctg_1106445177583
36029
36101
+
Thr
GGT
[ENA]
¡û
>ENV09004219
ADKK01000185
Hot springs metagenome ctg_1106445177583
21342
21415
+
Asn
GTT
[ENA]
¡û
>ENV09004220
ADKK01000197
Hot springs metagenome ctg_1106445177583
23678
23769
+
Ser
GGA
[ENA]
¡û
>ENV09004222
ADKK01000200
Hot springs metagenome ctg_1106445177583
3592
3506
-
Leu
TAA
[ENA]
¡û
>ENV09004221
ADKK01000200
Hot springs metagenome ctg_1106445177583
4300
4215
-
Leu
CAA
[ENA]
¡û
>ENV09004223
ADKK01000210
Hot springs metagenome ctg_1106445177583
5946
6034
+
Ser
TGA
[ENA]
¡û
>ENV09004224
ADKK01000213
Hot springs metagenome ctg_1106445177583
5988
6072
+
Leu
TAG
[ENA]
¡û
>ENV09004225
ADKK01000213
Hot springs metagenome ctg_1106445177583
6118
6191
+
Gly
GCC
[ENA]
¡û
>ENV09004226
ADKK01000215
Hot springs metagenome ctg_1106445177583
10752
10825
+
His
GTG
[ENA]
¡û
>ENV09004227
ADKK01000215
Hot springs metagenome ctg_1106445177583
14505
14579
+
Gln
TTG
[ENA]
¡û
>ENV09004228
ADKK01000217
Hot springs metagenome ctg_1106445177583
88899
88828
-
Cys
GCA
[ENA]
¡û
>ENV09004229
ADKK01000221
Hot springs metagenome ctg_1106445177583
3772
3699
-
Phe
GAA
[ENA]
¡û
>ENV09004230
ADKK01000224
Hot springs metagenome ctg_1106445177583
999
1074
+
Lys
TTT
[ENA]
¡û
>ENV09004231
ADKK01000224
Hot springs metagenome ctg_1106445177583
1084
1159
+
Glu
TTC
[ENA]
¡û
>ENV09004232
ADKK01000234
Hot springs metagenome ctg_1106445177583
2713
2797
+
Leu
GAG
[ENA]
¡û
>ENV09004233
ADKK01000235
Hot springs metagenome ctg_1106445177583
79860
79933
+
Ile
GAT
[ENA]
¡û
>ENV09004234
ADKK01000235
Hot springs metagenome ctg_1106445177583
79941
80015
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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