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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Hot springs metagenome ctg_1106445180384
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV09004109
ADKI01000060
Hot springs metagenome ctg_1106445180384
596
672
+
Met
CAT
[ENA]
¡û
>ENV09004110
ADKI01000132
Hot springs metagenome ctg_1106445180384
541
616
+
Val
TAC
[ENA]
¡û
>ENV09004111
ADKI01000145
Hot springs metagenome ctg_1106445180384
530
453
-
Arg
GCG
[ENA]
¡û
>ENV09004112
ADKI01000147
Hot springs metagenome ctg_1106445180384
22
93
+
Undet
???
[ENA]
¡û
>ENV09004113
ADKI01000253
Hot springs metagenome ctg_1106445180384
278
206
-
Ala
GGC
[ENA]
¡û
>ENV09004114
ADKI01000259
Hot springs metagenome ctg_1106445180384
3310
3235
-
Pro
CGG
[ENA]
¡û
>ENV09004115
ADKI01000363
Hot springs metagenome ctg_1106445180384
2418
2345
-
Met
CAT
[ENA]
¡û
>ENV09004116
ADKI01000397
Hot springs metagenome ctg_1106445180384
1540
1467
-
Cys
GCA
[ENA]
¡û
>ENV09004117
ADKI01000451
Hot springs metagenome ctg_1106445180384
627
548
-
Pro
GGG
[ENA]
¡û
>ENV09004118
ADKI01000511
Hot springs metagenome ctg_1106445180384
709
632
-
Gly
GCC
[ENA]
¡û
>ENV09004119
ADKI01000531
Hot springs metagenome ctg_1106445180384
1352
1274
-
Met
CAT
[ENA]
¡û
>ENV09004120
ADKI01000538
Hot springs metagenome ctg_1106445180384
670
592
-
Met
CAT
[ENA]
¡û
>ENV09004121
ADKI01000597
Hot springs metagenome ctg_1106445180384
1009
1080
+
Ala
CGC
[ENA]
¡û
>ENV09004122
ADKI01000623
Hot springs metagenome ctg_1106445180384
806
878
+
Ala
TGC
[ENA]
¡û
>ENV09004123
ADKI01000646
Hot springs metagenome ctg_1106445180384
626
553
-
Lys
TTT
[ENA]
¡û
>ENV09004124
ADKI01000693
Hot springs metagenome ctg_1106445180384
533
606
+
Pro
TGG
[ENA]
¡û
>ENV09004125
ADKI01000705
Hot springs metagenome ctg_1106445180384
1420
1349
-
Val
TAC
[ENA]
¡û
>ENV09004126
ADKI01000707
Hot springs metagenome ctg_1106445180384
1999
1925
-
Val
TAC
[ENA]
¡û
>ENV09004127
ADKI01000729
Hot springs metagenome ctg_1106445180384
1485
1562
+
Met
CAT
[ENA]
¡û
>ENV09004128
ADKI01000769
Hot springs metagenome ctg_1106445180384
456
539
+
Leu
GAG
[ENA]
¡û
>ENV09004129
ADKI01000842
Hot springs metagenome ctg_1106445180384
449
375
-
Arg
CCT
[ENA]
¡û
>ENV09004130
ADKI01000876
Hot springs metagenome ctg_1106445180384
150
227
+
Gln
CTG
[ENA]
¡û
>ENV09004131
ADKI01000947
Hot springs metagenome ctg_1106445180384
82
8
-
Pro
TGG
[ENA]
¡û
>ENV09004132
ADKI01001060
Hot springs metagenome ctg_1106445180384
1185
1109
-
Pro
GGG
[ENA]
¡û
>ENV09004133
ADKI01001217
Hot springs metagenome ctg_1106445180384
1598
1522
-
Arg
TCG
[ENA]
¡û
>ENV09004134
ADKI01001299
Hot springs metagenome ctg_1106445180384
827
757
-
Cys
GCA
[ENA]
¡û
>ENV09004135
ADKI01001312
Hot springs metagenome ctg_1106445180384
762
833
+
Val
GAC
[ENA]
¡û
>ENV09004136
ADKI01001356
Hot springs metagenome ctg_1106445180384
1360
1434
+
Lys
CTT
[ENA]
¡û
>ENV09004137
ADKI01001425
Hot springs metagenome ctg_1106445180384
138
213
+
Arg
CCT
[ENA]
¡û
>ENV09004138
ADKI01001458
Hot springs metagenome ctg_1106445180384
492
418
-
Gln
TTG
[ENA]
¡û
>ENV09004139
ADKI01001465
Hot springs metagenome ctg_1106445180384
1274
1348
+
Lys
CTT
[ENA]
¡û
>ENV09004140
ADKI01001502
Hot springs metagenome ctg_1106445180384
517
590
+
Thr
GGT
[ENA]
¡û
>ENV09004141
ADKI01001658
Hot springs metagenome ctg_1106445180384
241
325
+
Leu
CAG
[ENA]
¡û
>ENV09004142
ADKI01001684
Hot springs metagenome ctg_1106445180384
740
668
-
Asn
GTT
[ENA]
¡û
>ENV09004143
ADKI01001691
Hot springs metagenome ctg_1106445180384
1726
1797
+
Ala
GGC
[ENA]
¡û
>ENV09004144
ADKI01001694
Hot springs metagenome ctg_1106445180384
611
538
-
Ala
CGC
[ENA]
¡û
>ENV09004145
ADKI01001874
Hot springs metagenome ctg_1106445180384
301
375
+
Asp
GTC
[ENA]
¡û
>ENV09004146
ADKI01001893
Hot springs metagenome ctg_1106445180384
745
818
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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