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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
Hot springs metagenome ctg_1106445186506
HIT:
28 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV09004081
ADKH01000004
Hot springs metagenome ctg_1106445186506
1111
1188
+
Val
TAC
[ENA]
¡û
>ENV09004082
ADKH01000045
Hot springs metagenome ctg_1106445186506
702
778
+
Trp
CCA
[ENA]
¡û
>ENV09004083
ADKH01000143
Hot springs metagenome ctg_1106445186506
294
219
-
Glu
CTC
[ENA]
¡û
>ENV09004084
ADKH01000218
Hot springs metagenome ctg_1106445186506
1332
1407
+
Ala
CGC
[ENA]
¡û
>ENV09004085
ADKH01000484
Hot springs metagenome ctg_1106445186506
2953
3042
+
Ser
CGA
[ENA]
¡û
>ENV09004086
ADKH01000535
Hot springs metagenome ctg_1106445186506
3889
3964
+
Asn
GTT
[ENA]
¡û
>ENV09004087
ADKH01000628
Hot springs metagenome ctg_1106445186506
1327
1250
-
Met
CAT
[ENA]
¡û
>ENV09004088
ADKH01000639
Hot springs metagenome ctg_1106445186506
3496
3573
+
Val
CAC
[ENA]
¡û
>ENV09004089
ADKH01000655
Hot springs metagenome ctg_1106445186506
779
856
+
Arg
CCT
[ENA]
¡û
>ENV09004090
ADKH01000665
Hot springs metagenome ctg_1106445186506
996
1071
+
Ala
TGC
[ENA]
¡û
>ENV09004091
ADKH01000711
Hot springs metagenome ctg_1106445186506
3277
3201
-
Asp
GTC
[ENA]
¡û
>ENV09004092
ADKH01000793
Hot springs metagenome ctg_1106445186506
5140
5052
-
Ser
TGA
[ENA]
¡û
>ENV09004093
ADKH01000832
Hot springs metagenome ctg_1106445186506
89
177
+
Undet
???
[ENA]
¡û
>ENV09004094
ADKH01001038
Hot springs metagenome ctg_1106445186506
3236
3161
-
Thr
GGT
[ENA]
¡û
>ENV09004095
ADKH01001040
Hot springs metagenome ctg_1106445186506
510
424
-
Ser
GGA
[ENA]
¡û
>ENV09004097
ADKH01001043
Hot springs metagenome ctg_1106445186506
996
921
-
Gln
TTG
[ENA]
¡û
>ENV09004096
ADKH01001043
Hot springs metagenome ctg_1106445186506
1243
1170
-
Gln
CTG
[ENA]
¡û
>ENV09004098
ADKH01001090
Hot springs metagenome ctg_1106445186506
1120
1207
+
Leu
CAA
[ENA]
¡û
>ENV09004099
ADKH01001147
Hot springs metagenome ctg_1106445186506
6677
6587
-
Gly
CCC
[ENA]
¡û
>ENV09004100
ADKH01001168
Hot springs metagenome ctg_1106445186506
2377
2464
+
Leu
TAG
[ENA]
¡û
>ENV09004101
ADKH01001179
Hot springs metagenome ctg_1106445186506
2220
2304
+
Ser
GCT
[ENA]
¡û
>ENV09004102
ADKH01001350
Hot springs metagenome ctg_1106445186506
1393
1470
+
Lys
CTT
[ENA]
¡û
>ENV09004103
ADKH01001371
Hot springs metagenome ctg_1106445186506
314
408
+
Thr
GGT
[ENA]
¡û
>ENV09004104
ADKH01001520
Hot springs metagenome ctg_1106445186506
4402
4326
-
Met
CAT
[ENA]
¡û
>ENV09004105
ADKH01001561
Hot springs metagenome ctg_1106445186506
4462
4539
+
Arg
TCG
[ENA]
¡û
>ENV09004106
ADKH01001567
Hot springs metagenome ctg_1106445186506
5230
5308
+
Arg
GCG
[ENA]
¡û
>ENV09004107
ADKH01001567
Hot springs metagenome ctg_1106445186506
6888
6812
-
His
GTG
[ENA]
¡û
>ENV09004108
ADKH01001604
Hot springs metagenome ctg_1106445186506
499
412
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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