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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
Hot springs metagenome ctg_1106445192081
HIT:
59 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV09004147
ADKJ01000072
Hot springs metagenome ctg_1106445192081
327
419
+
Ser
GGA
[ENA]
¡û
>ENV09004148
ADKJ01000076
Hot springs metagenome ctg_1106445192081
2460
2389
-
Cys
GCA
[ENA]
¡û
>ENV09004149
ADKJ01000087
Hot springs metagenome ctg_1106445192081
844
919
+
Lys
TTT
[ENA]
¡û
>ENV09004150
ADKJ01000087
Hot springs metagenome ctg_1106445192081
1014
1088
+
Glu
CTC
[ENA]
¡û
>ENV09004151
ADKJ01000087
Hot springs metagenome ctg_1106445192081
1090
1166
+
Val
TAC
[ENA]
¡û
>ENV09004152
ADKJ01000117
Hot springs metagenome ctg_1106445192081
1245
1170
-
Met
CAT
[ENA]
¡û
>ENV09004153
ADKJ01000123
Hot springs metagenome ctg_1106445192081
454
528
+
Cys
GCA
[ENA]
¡û
>ENV09004154
ADKJ01000123
Hot springs metagenome ctg_1106445192081
537
613
+
Val
GAC
[ENA]
¡û
>ENV09004155
ADKJ01000250
Hot springs metagenome ctg_1106445192081
634
720
+
Leu
TAA
[ENA]
¡û
>ENV09004156
ADKJ01000260
Hot springs metagenome ctg_1106445192081
803
880
+
Met
CAT
[ENA]
¡û
>ENV09004157
ADKJ01000273
Hot springs metagenome ctg_1106445192081
1074
1150
+
Arg
ACG
[ENA]
¡û
>ENV09004158
ADKJ01000347
Hot springs metagenome ctg_1106445192081
1937
1844
-
Ser
GGA
[ENA]
¡û
>ENV09004159
ADKJ01000356
Hot springs metagenome ctg_1106445192081
3164
3090
-
Arg
CCT
[ENA]
¡û
>ENV09004160
ADKJ01000380
Hot springs metagenome ctg_1106445192081
825
748
-
Asp
GTC
[ENA]
¡û
>ENV09004161
ADKJ01000432
Hot springs metagenome ctg_1106445192081
1116
1191
+
Lys
CTT
[ENA]
¡û
>ENV09004162
ADKJ01000452
Hot springs metagenome ctg_1106445192081
2247
2321
+
Undet
???
[ENA]
¡û
>ENV09004163
ADKJ01000452
Hot springs metagenome ctg_1106445192081
2332
2417
+
Tyr
GTA
[ENA]
¡û
>ENV09004164
ADKJ01000452
Hot springs metagenome ctg_1106445192081
2443
2518
+
Gly
CCC
[ENA]
¡û
>ENV09004165
ADKJ01000452
Hot springs metagenome ctg_1106445192081
2522
2597
+
Thr
GGT
[ENA]
¡û
>ENV09004166
ADKJ01000550
Hot springs metagenome ctg_1106445192081
614
687
+
Trp
CCA
[ENA]
¡û
>ENV09004167
ADKJ01000627
Hot springs metagenome ctg_1106445192081
163
88
-
Trp
CCA
[ENA]
¡û
>ENV09004168
ADKJ01000672
Hot springs metagenome ctg_1106445192081
191
264
+
His
GTG
[ENA]
¡û
>ENV09004169
ADKJ01000699
Hot springs metagenome ctg_1106445192081
256
342
+
Leu
CAG
[ENA]
¡û
>ENV09004170
ADKJ01000722
Hot springs metagenome ctg_1106445192081
2291
2376
+
Leu
CAA
[ENA]
¡û
>ENV09004171
ADKJ01000722
Hot springs metagenome ctg_1106445192081
3312
3387
+
Lys
TTT
[ENA]
¡û
>ENV09004173
ADKJ01000838
Hot springs metagenome ctg_1106445192081
775
691
-
Leu
TAG
[ENA]
¡û
>ENV09004172
ADKJ01000838
Hot springs metagenome ctg_1106445192081
904
828
-
His
GTG
[ENA]
¡û
>ENV09004174
ADKJ01000895
Hot springs metagenome ctg_1106445192081
1069
1143
+
Arg
ACG
[ENA]
¡û
>ENV09004175
ADKJ01000903
Hot springs metagenome ctg_1106445192081
633
706
+
His
GTG
[ENA]
¡û
>ENV09004177
ADKJ01000912
Hot springs metagenome ctg_1106445192081
5970
5894
-
Asp
GTC
[ENA]
¡û
>ENV09004176
ADKJ01000912
Hot springs metagenome ctg_1106445192081
6058
5983
-
Val
TAC
[ENA]
¡û
>ENV09004178
ADKJ01000985
Hot springs metagenome ctg_1106445192081
925
837
-
Ser
TGA
[ENA]
¡û
>ENV09004179
ADKJ01001085
Hot springs metagenome ctg_1106445192081
123
50
-
Ile
GAT
[ENA]
¡û
>ENV09004180
ADKJ01001095
Hot springs metagenome ctg_1106445192081
721
646
-
Asn
GTT
[ENA]
¡û
>ENV09004181
ADKJ01001127
Hot springs metagenome ctg_1106445192081
1077
1003
-
Arg
CCT
[ENA]
¡û
>ENV09004182
ADKJ01001211
Hot springs metagenome ctg_1106445192081
971
885
-
Leu
CAA
[ENA]
¡û
>ENV09004183
ADKJ01001235
Hot springs metagenome ctg_1106445192081
4974
5050
+
Met
CAT
[ENA]
¡û
>ENV09004186
ADKJ01001271
Hot springs metagenome ctg_1106445192081
219
144
-
Arg
TCT
[ENA]
¡û
>ENV09004185
ADKJ01001271
Hot springs metagenome ctg_1106445192081
327
252
-
Gly
TCC
[ENA]
¡û
>ENV09004184
ADKJ01001271
Hot springs metagenome ctg_1106445192081
405
329
-
Pro
TGG
[ENA]
¡û
>ENV09004187
ADKJ01001378
Hot springs metagenome ctg_1106445192081
911
995
+
Leu
TAG
[ENA]
¡û
>ENV09004188
ADKJ01001378
Hot springs metagenome ctg_1106445192081
1041
1114
+
Gly
GCC
[ENA]
¡û
>ENV09004189
ADKJ01001386
Hot springs metagenome ctg_1106445192081
5383
5310
-
Pro
GGG
[ENA]
¡û
>ENV09004191
ADKJ01001492
Hot springs metagenome ctg_1106445192081
331
238
-
Ser
GCT
[ENA]
¡û
>ENV09004190
ADKJ01001492
Hot springs metagenome ctg_1106445192081
429
339
-
Ser
TGA
[ENA]
¡û
>ENV09004192
ADKJ01001500
Hot springs metagenome ctg_1106445192081
1099
1172
+
Gln
TTG
[ENA]
¡û
>ENV09004193
ADKJ01001509
Hot springs metagenome ctg_1106445192081
4964
4889
-
Ala
CGC
[ENA]
¡û
>ENV09004195
ADKJ01001516
Hot springs metagenome ctg_1106445192081
866
790
-
Ile
GAT
[ENA]
¡û
>ENV09004194
ADKJ01001516
Hot springs metagenome ctg_1106445192081
4333
4408
+
Gly
GCC
[ENA]
¡û
>ENV09004196
ADKJ01001543
Hot springs metagenome ctg_1106445192081
1535
1611
+
Arg
CCT
[ENA]
¡û
>ENV09004197
ADKJ01001549
Hot springs metagenome ctg_1106445192081
2222
2298
+
Asp
GTC
[ENA]
¡û
>ENV09004198
ADKJ01001549
Hot springs metagenome ctg_1106445192081
2300
2375
+
Phe
GAA
[ENA]
¡û
>ENV09004199
ADKJ01001552
Hot springs metagenome ctg_1106445192081
4347
4422
+
Ala
GGC
[ENA]
¡û
>ENV09004200
ADKJ01001553
Hot springs metagenome ctg_1106445192081
525
439
-
Leu
GAG
[ENA]
¡û
>ENV09004201
ADKJ01001591
Hot springs metagenome ctg_1106445192081
1061
1135
+
Val
CAC
[ENA]
¡û
>ENV09004203
ADKJ01001595
Hot springs metagenome ctg_1106445192081
4875
4799
-
Glu
TTC
[ENA]
¡û
>ENV09004202
ADKJ01001595
Hot springs metagenome ctg_1106445192081
4958
4885
-
Lys
TTT
[ENA]
¡û
>ENV09004204
ADKJ01001596
Hot springs metagenome ctg_1106445192081
5144
5053
-
Ser
GCT
[ENA]
¡û
>ENV09004205
ADKJ01001606
Hot springs metagenome ctg_1106445192081
1849
1922
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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