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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
Ignavibacteriota
Bacteria
HIT:
90 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>C121012800
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
288080
288155
+
Met
CAT
[Ensembl]
¡û
>C121012801
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
635199
635273
+
Lys
TTT
[Ensembl]
¡û
>C121012802
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
796412
796488
+
Ile
GAT
[Ensembl]
¡û
>C121012803
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
796559
796634
+
Ala
TGC
[Ensembl]
¡û
>C121012804
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
895873
895949
+
Arg
CCG
[Ensembl]
¡û
>C121012805
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1003739
1003825
+
Tyr
GTA
[Ensembl]
¡û
>C121012806
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1003832
1003908
+
Gly
TCC
[Ensembl]
¡û
>C121012807
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1003953
1004028
+
Thr
GGT
[Ensembl]
¡û
>C121012808
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1004223
1004299
+
Trp
CCA
[Ensembl]
¡û
>C121012809
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1027881
1027954
+
Gln
TTG
[Ensembl]
¡û
>C121012810
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1061019
1061092
+
Thr
TGT
[Ensembl]
¡û
>C121012811
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1318829
1318915
+
Leu
CAG
[Ensembl]
¡û
>C121012812
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1396502
1396576
+
Gly
CCC
[Ensembl]
¡û
>C121012813
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1397413
1397488
+
Val
TAC
[Ensembl]
¡û
>C121012814
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1540639
1540721
+
Leu
GAG
[Ensembl]
¡û
>C121012815
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1563736
1563809
+
Gln
CTG
[Ensembl]
¡û
>C121012816
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1564727
1564803
+
Glu
CTC
[Ensembl]
¡û
>C121012817
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1608672
1608746
+
Met
CAT
[Ensembl]
¡û
>C121012818
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1646224
1646312
+
Leu
TAA
[Ensembl]
¡û
>C121012819
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1647310
1647386
+
Val
GAC
[Ensembl]
¡û
>C121012844
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1701909
1701833
-
Cys
GCA
[Ensembl]
¡û
>C121012843
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1702019
1701944
-
Gly
GCC
[Ensembl]
¡û
>C121012820
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1725122
1725197
+
Pro
TGG
[Ensembl]
¡û
>C121012821
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1725214
1725290
+
Arg
TCT
[Ensembl]
¡û
>C121012822
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1726135
1726210
+
His
GTG
[Ensembl]
¡û
>C121012823
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1726250
1726324
+
Glu
TTC
[Ensembl]
¡û
>C121012842
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1804953
1804879
-
Pro
GGG
[Ensembl]
¡û
>C121012824
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1822424
1822500
+
Arg
ACG
[Ensembl]
¡û
>C121012825
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1833463
1833539
+
Arg
TCG
[Ensembl]
¡û
>C121012841
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1916928
1916853
-
Ala
GGC
[Ensembl]
¡û
>C121012826
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
1940356
1940441
+
Leu
TAG
[Ensembl]
¡û
>C121012827
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2018951
2019039
+
Leu
CAA
[Ensembl]
¡û
>C121012828
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2030321
2030413
+
Ser
GCT
[Ensembl]
¡û
>C121012840
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2109195
2109104
-
Ser
CGA
[Ensembl]
¡û
>C121012829
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2109313
2109404
+
Ser
GGA
[Ensembl]
¡û
>C121012839
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2271166
2271092
-
Asp
GTC
[Ensembl]
¡û
>C121012838
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2366644
2366569
-
Phe
GAA
[Ensembl]
¡û
>C121012830
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2516308
2516385
+
Pro
CGG
[Ensembl]
¡û
>C121012837
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2535920
2535847
-
Thr
CGT
[Ensembl]
¡û
>C121012836
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2613649
2613573
-
Met
CAT
[Ensembl]
¡û
>C121012835
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
2974419
2974345
-
Asn
GTT
[Ensembl]
¡û
>C121012834
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
3095240
3095164
-
Arg
CCT
[Ensembl]
¡û
>C121012831
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
3260619
3260692
+
Ala
CGC
[Ensembl]
¡û
>C121012832
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
3341339
3341428
+
Ser
TGA
[Ensembl]
¡û
>C121012833
CP003418
Ignavibacteriota
Ignavibacterium album JCM 16511 [CP003418]
3529194
3529269
+
Lys
CTT
[Ensembl]
¡û
>C121014524
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
12
88
+
Arg
ACG
-
¡û
>C121014568
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
77309
77233
-
Val
GAC
-
¡û
>C121014567
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
78135
78049
-
Leu
TAA
-
¡û
>C121014525
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
78311
78385
+
Met
CAT
-
¡û
>C121014566
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
166635
166560
-
Val
TAC
-
¡û
>C121014565
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
166786
166711
-
Gly
CCC
-
¡û
>C121014564
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
192924
192849
-
Phe
GAA
-
¡û
>C121014563
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
236833
236760
-
Gln
TTG
-
¡û
>C121014562
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
260521
260446
-
Trp
CCA
-
¡û
>C121014561
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
260828
260753
-
Thr
GGT
-
¡û
>C121014560
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
260975
260902
-
Gly
TCC
-
¡û
>C121014559
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
261193
261109
-
Tyr
GTA
-
¡û
>C121014558
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
370939
370864
-
Thr
CGT
-
¡û
>C121014526
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
401057
401133
+
Arg
TCG
-
¡û
>C121014527
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
406307
406384
+
Arg
CCT
-
¡û
>C121014557
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
500656
500580
-
Met
CAT
-
¡û
>C121014556
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
666195
666123
-
Lys
TTT
-
¡û
>C121014555
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
731008
730934
-
Asn
GTT
-
¡û
>C121014528
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
1438715
1438787
+
Arg
CCG
-
¡û
>C121014554
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
1515241
1515168
-
Lys
CTT
-
¡û
>C121014529
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
1572043
1572120
+
Asp
GTC
-
¡û
>C121014553
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
1648876
1648803
-
Thr
TGT
-
¡û
>C121014530
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
1672007
1672096
+
Ser
TGA
-
¡û
>C121014552
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2006413
2006338
-
Met
CAT
-
¡û
>C121014531
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2088017
2088093
+
Ile
GAT
-
¡û
>C121014532
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2088137
2088212
+
Ala
TGC
-
¡û
>C121014551
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2126239
2126162
-
Pro
CGG
-
¡û
>C121014533
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2203049
2203125
+
Glu
CTC
-
¡û
>C121014550
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2297680
2297606
-
Cys
GCA
-
¡û
>C121014549
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2297992
2297917
-
Gly
GCC
-
¡û
>C121014534
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2318761
2318847
+
Leu
GAG
-
¡û
>C121014535
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2334061
2334134
+
Gln
CTG
-
¡û
>C121014548
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2581879
2581788
-
Ser
GCT
-
¡û
>C121014547
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2677300
2677215
-
Leu
TAG
-
¡û
>C121014536
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2778327
2778415
+
Leu
CAA
-
¡û
>C121014537
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
2936958
2937032
+
Pro
GGG
-
¡û
>C121014546
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
3083408
3083334
-
Glu
TTC
-
¡û
>C121014545
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
3083512
3083438
-
Glu
TTC
-
¡û
>C121014544
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
3083593
3083519
-
His
GTG
-
¡û
>C121014543
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
3083707
3083631
-
Arg
TCT
-
¡û
>C121014542
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
3083831
3083756
-
Pro
TGG
-
¡û
>C121014541
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
3182692
3182617
-
Ala
GGC
-
¡û
>C121014540
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
3239461
3239371
-
Ser
CGA
-
¡û
>C121014538
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
3239603
3239690
+
Ser
GGA
-
¡û
>C121014539
CP003557
Ignavibacteriota
Melioribacter roseus P3M-2 [CP003557]
3263388
3263302
-
Leu
CAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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