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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Kiritimatiellota
Bacteria
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>C151074118
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2802
2729
-
Gln
CTG
[Ensembl]
¡û
>C151074117
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
32632
32541
-
Ser
GGA
[Ensembl]
¡û
>C151074116
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
51609
51533
-
Met
CAT
[Ensembl]
¡û
>C151074075
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
88327
88402
+
Phe
GAA
[Ensembl]
¡û
>C151074076
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
134321
134394
+
Pro
TGG
[Ensembl]
¡û
>C151074077
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
157398
157484
+
Leu
GAG
[Ensembl]
¡û
>C151074078
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
251850
251925
+
Val
CAC
[Ensembl]
¡û
>C151074115
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
282767
282695
-
Lys
CTT
[Ensembl]
¡û
>C151074114
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
560211
560125
-
Leu
CAG
[Ensembl]
¡û
>C151074079
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
586947
587022
+
Ala
TGC
[Ensembl]
¡û
>C151074080
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
587074
587150
+
Ile
GAT
[Ensembl]
¡û
>C151074113
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
648871
648797
-
Gly
CCC
[Ensembl]
¡û
>C151074112
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
672302
672226
-
Met
CAT
[Ensembl]
¡û
>C151074081
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
705396
705472
+
His
GTG
[Ensembl]
¡û
>C151074111
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
875312
875236
-
Pro
GGG
[Ensembl]
¡û
>C151074110
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
881169
881095
-
Arg
CCG
[Ensembl]
¡û
>C151074082
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
884692
884767
+
Arg
TCT
[Ensembl]
¡û
>C151074083
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
920542
920618
+
Arg
ACG
[Ensembl]
¡û
>C151074109
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1127410
1127325
-
Tyr
GTA
[Ensembl]
¡û
>C151074108
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1138157
1138081
-
Val
GAC
[Ensembl]
¡û
>C151074084
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1165852
1165925
+
Gly
TCC
[Ensembl]
¡û
>C151074107
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1228274
1228191
-
Leu
TAA
[Ensembl]
¡û
>C151074085
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1240017
1240091
+
Gly
GCC
[Ensembl]
¡û
>C151074106
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1245360
1245285
-
Thr
CGT
[Ensembl]
¡û
>C151074086
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1246775
1246850
+
Ala
GGC
[Ensembl]
¡û
>C151074087
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1261633
1261709
+
Pro
CGG
[Ensembl]
¡û
>C151074088
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1319253
1319326
+
Lys
TTT
[Ensembl]
¡û
>C151074105
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1347989
1347915
-
Cys
GCA
[Ensembl]
¡û
>C151074104
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1384859
1384786
-
Gln
TTG
[Ensembl]
¡û
>C151074089
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1650665
1650751
+
Leu
CAA
[Ensembl]
¡û
>C151074103
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1828739
1828665
-
Asn
GTT
[Ensembl]
¡û
>C151074090
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1829528
1829620
+
Ser
GCT
[Ensembl]
¡û
>C151074102
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
1950399
1950323
-
Arg
CCT
[Ensembl]
¡û
>C151074101
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2009458
2009382
-
Trp
CCA
[Ensembl]
¡û
>C151074100
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2011020
2010945
-
Thr
GGT
[Ensembl]
¡û
>C151074091
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2021165
2021240
+
Glu
TTC
[Ensembl]
¡û
>C151074092
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2170205
2170280
+
Ala
CGC
[Ensembl]
¡û
>C151074093
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2377498
2377574
+
Asp
GTC
[Ensembl]
¡û
>C151074099
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2484410
2484337
-
Val
TAC
[Ensembl]
¡û
>C151074094
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2524719
2524794
+
Thr
TGT
[Ensembl]
¡û
>C151074098
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2535958
2535873
-
Leu
TAG
[Ensembl]
¡û
>C151074095
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2544703
2544796
+
Ser
CGA
[Ensembl]
¡û
>C151074096
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2812049
2812136
+
Ser
TGA
[Ensembl]
¡û
>C151074097
CP010904
Kiritimatiellota
Kiritimatiella glycovorans L21-Fru-AB [CP010904]
2932735
2932808
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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