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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
Line Islands Corals microbial fraction from water of Fanning (SRP000142)
HIT:
6 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1000961
SRR001050.10656
Line Islands Corals microbial fraction from water of Fanning (SRP000142)
37
111
+
Pro
TGG
[SRA]
>SRA1000962
SRR001050.114269
Line Islands Corals microbial fraction from water of Fanning (SRP000142)
18
93
+
Phe
GAA
[SRA]
>SRA1000963
SRR001050.184136
Line Islands Corals microbial fraction from water of Fanning (SRP000142)
37
111
+
Pro
TGG
[SRA]
>SRA1000964
SRR001050.233482
Line Islands Corals microbial fraction from water of Fanning (SRP000142)
18
93
+
Phe
GAA
[SRA]
>SRA1000965
SRR001050.263453
Line Islands Corals microbial fraction from water of Fanning (SRP000142)
14
85
+
Asp
GTC
[SRA]
>SRA1000966
SRR001050.326361
Line Islands Corals microbial fraction from water of Fanning (SRP000142)
87
1
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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