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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Line Islands Corals viral fraction from water of Fanning (SRP000143)
HIT:
75 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1000995
SRR001051.100818
Line Islands Corals viral fraction from water of Fanning (SRP000143)
95
20
-
Phe
GAA
[SRA]
>SRA1000996
SRR001051.107480
Line Islands Corals viral fraction from water of Fanning (SRP000143)
92
18
-
Met
CAT
[SRA]
>SRA1000997
SRR001051.108400
Line Islands Corals viral fraction from water of Fanning (SRP000143)
75
1
-
Ala
TGC
[SRA]
>SRA1000967
SRR001051.1092
Line Islands Corals viral fraction from water of Fanning (SRP000143)
39
115
+
Arg
TCT
[SRA]
>SRA1000998
SRR001051.111171
Line Islands Corals viral fraction from water of Fanning (SRP000143)
109
33
-
Met
CAT
[SRA]
>SRA1000999
SRR001051.112239
Line Islands Corals viral fraction from water of Fanning (SRP000143)
37
109
+
Gln
CTG
[SRA]
>SRA1001000
SRR001051.113931
Line Islands Corals viral fraction from water of Fanning (SRP000143)
87
15
-
Lys
TTT
[SRA]
>SRA1001001
SRR001051.116564
Line Islands Corals viral fraction from water of Fanning (SRP000143)
93
20
-
Lys
TTT
[SRA]
>SRA1001002
SRR001051.137233
Line Islands Corals viral fraction from water of Fanning (SRP000143)
24
98
+
Met
CAT
[SRA]
>SRA1001003
SRR001051.140905
Line Islands Corals viral fraction from water of Fanning (SRP000143)
104
28
-
Arg
TCT
[SRA]
>SRA1001004
SRR001051.149849
Line Islands Corals viral fraction from water of Fanning (SRP000143)
6
83
+
Met
CAT
[SRA]
>SRA1001005
SRR001051.150746
Line Islands Corals viral fraction from water of Fanning (SRP000143)
30
102
+
Thr
TGT
[SRA]
>SRA1001006
SRR001051.168853
Line Islands Corals viral fraction from water of Fanning (SRP000143)
110
35
-
Lys
TTT
[SRA]
>SRA1001007
SRR001051.178453
Line Islands Corals viral fraction from water of Fanning (SRP000143)
85
9
-
Arg
TCT
[SRA]
>SRA1001008
SRR001051.179382
Line Islands Corals viral fraction from water of Fanning (SRP000143)
88
11
-
Met
CAT
[SRA]
>SRA1001009
SRR001051.182692
Line Islands Corals viral fraction from water of Fanning (SRP000143)
8
85
+
Met
CAT
[SRA]
>SRA1001010
SRR001051.183972
Line Islands Corals viral fraction from water of Fanning (SRP000143)
102
28
-
Val
TAC
[SRA]
>SRA1001011
SRR001051.185368
Line Islands Corals viral fraction from water of Fanning (SRP000143)
111
39
-
Lys
TTT
[SRA]
>SRA1000969
SRR001051.19279
Line Islands Corals viral fraction from water of Fanning (SRP000143)
84
9
-
Thr
TGT
[SRA]
>SRA1001012
SRR001051.197612
Line Islands Corals viral fraction from water of Fanning (SRP000143)
82
6
-
Arg
TCT
[SRA]
>SRA1000970
SRR001051.20458
Line Islands Corals viral fraction from water of Fanning (SRP000143)
99
24
-
Asn
GTT
[SRA]
>SRA1001013
SRR001051.210132
Line Islands Corals viral fraction from water of Fanning (SRP000143)
30
102
+
Glu
TTC
[SRA]
>SRA1001014
SRR001051.210956
Line Islands Corals viral fraction from water of Fanning (SRP000143)
30
102
+
Glu
TTC
[SRA]
>SRA1001015
SRR001051.211770
Line Islands Corals viral fraction from water of Fanning (SRP000143)
19
105
+
Leu
TAA
[SRA]
>SRA1000971
SRR001051.21235
Line Islands Corals viral fraction from water of Fanning (SRP000143)
23
104
+
Tyr
GTA
[SRA]
>SRA1001016
SRR001051.235429
Line Islands Corals viral fraction from water of Fanning (SRP000143)
18
94
+
Met
CAT
[SRA]
>SRA1001017
SRR001051.246494
Line Islands Corals viral fraction from water of Fanning (SRP000143)
13
89
+
Met
CAT
[SRA]
>SRA1000972
SRR001051.27838
Line Islands Corals viral fraction from water of Fanning (SRP000143)
73
-1
-
Lys
CTT
[SRA]
>SRA1001018
SRR001051.280823
Line Islands Corals viral fraction from water of Fanning (SRP000143)
18
94
+
Met
CAT
[SRA]
>SRA1001019
SRR001051.283815
Line Islands Corals viral fraction from water of Fanning (SRP000143)
115
40
-
Lys
TTT
[SRA]
>SRA1001020
SRR001051.291309
Line Islands Corals viral fraction from water of Fanning (SRP000143)
89
12
-
Pro
GGG
[SRA]
>SRA1001021
SRR001051.292964
Line Islands Corals viral fraction from water of Fanning (SRP000143)
80
4
-
Met
CAT
[SRA]
>SRA1001022
SRR001051.295715
Line Islands Corals viral fraction from water of Fanning (SRP000143)
109
35
-
Arg
GCG
[SRA]
>SRA1001023
SRR001051.296469
Line Islands Corals viral fraction from water of Fanning (SRP000143)
85
10
-
Lys
TTT
[SRA]
>SRA1001024
SRR001051.300651
Line Islands Corals viral fraction from water of Fanning (SRP000143)
116
39
-
Arg
TCT
[SRA]
>SRA1001025
SRR001051.302272
Line Islands Corals viral fraction from water of Fanning (SRP000143)
100
24
-
Arg
TCT
[SRA]
>SRA1000973
SRR001051.31114
Line Islands Corals viral fraction from water of Fanning (SRP000143)
5
79
+
Arg
TCT
[SRA]
>SRA1001026
SRR001051.318955
Line Islands Corals viral fraction from water of Fanning (SRP000143)
8
93
+
Leu
CAA
[SRA]
>SRA1001027
SRR001051.319955
Line Islands Corals viral fraction from water of Fanning (SRP000143)
35
110
+
Arg
TCT
[SRA]
>SRA1001028
SRR001051.332390
Line Islands Corals viral fraction from water of Fanning (SRP000143)
103
29
-
Val
TAC
[SRA]
>SRA1001029
SRR001051.333508
Line Islands Corals viral fraction from water of Fanning (SRP000143)
3
79
+
Met
CAT
[SRA]
>SRA1001030
SRR001051.335418
Line Islands Corals viral fraction from water of Fanning (SRP000143)
87
12
-
Ile
TAT
[SRA]
>SRA1001031
SRR001051.345782
Line Islands Corals viral fraction from water of Fanning (SRP000143)
3
92
+
Leu
TAA
[SRA]
>SRA1000974
SRR001051.34684
Line Islands Corals viral fraction from water of Fanning (SRP000143)
96
19
-
Sup
CTA
[SRA]
>SRA1000975
SRR001051.35709
Line Islands Corals viral fraction from water of Fanning (SRP000143)
89
4
-
Leu
TAA
[SRA]
>SRA1001032
SRR001051.361647
Line Islands Corals viral fraction from water of Fanning (SRP000143)
99
16
-
Leu
TAA
[SRA]
>SRA1000976
SRR001051.36747
Line Islands Corals viral fraction from water of Fanning (SRP000143)
96
21
-
Asn
GTT
[SRA]
>SRA1001033
SRR001051.367909
Line Islands Corals viral fraction from water of Fanning (SRP000143)
106
30
-
Arg
TCT
[SRA]
>SRA1001034
SRR001051.372599
Line Islands Corals viral fraction from water of Fanning (SRP000143)
78
4
-
Asn
GTT
[SRA]
>SRA1001035
SRR001051.375370
Line Islands Corals viral fraction from water of Fanning (SRP000143)
90
13
-
Ile
TAT
[SRA]
>SRA1001036
SRR001051.375536
Line Islands Corals viral fraction from water of Fanning (SRP000143)
110
35
-
Lys
TTT
[SRA]
>SRA1001037
SRR001051.376286
Line Islands Corals viral fraction from water of Fanning (SRP000143)
97
22
-
Lys
TTT
[SRA]
>SRA1001038
SRR001051.388876
Line Islands Corals viral fraction from water of Fanning (SRP000143)
90
16
-
Met
CAT
[SRA]
>SRA1001039
SRR001051.395584
Line Islands Corals viral fraction from water of Fanning (SRP000143)
99
24
-
Lys
TTT
[SRA]
>SRA1001040
SRR001051.400183
Line Islands Corals viral fraction from water of Fanning (SRP000143)
11
87
+
Arg
TCT
[SRA]
>SRA1001041
SRR001051.410239
Line Islands Corals viral fraction from water of Fanning (SRP000143)
96
20
-
Arg
TCT
[SRA]
>SRA1000977
SRR001051.48274
Line Islands Corals viral fraction from water of Fanning (SRP000143)
7
84
+
Met
CAT
[SRA]
>SRA1000978
SRR001051.51319
Line Islands Corals viral fraction from water of Fanning (SRP000143)
81
5
-
Arg
TCT
[SRA]
>SRA1000979
SRR001051.55328
Line Islands Corals viral fraction from water of Fanning (SRP000143)
113
37
-
Lys
CTT
[SRA]
>SRA1000980
SRR001051.64635
Line Islands Corals viral fraction from water of Fanning (SRP000143)
18
94
+
Met
CAT
[SRA]
>SRA1000981
SRR001051.65445
Line Islands Corals viral fraction from water of Fanning (SRP000143)
92
19
-
Cys
GCA
[SRA]
>SRA1000982
SRR001051.66402
Line Islands Corals viral fraction from water of Fanning (SRP000143)
20
96
+
Met
CAT
[SRA]
>SRA1000983
SRR001051.68332
Line Islands Corals viral fraction from water of Fanning (SRP000143)
26
101
+
Arg
TCT
[SRA]
>SRA1000984
SRR001051.69639
Line Islands Corals viral fraction from water of Fanning (SRP000143)
32
116
+
Leu
TAA
[SRA]
>SRA1000985
SRR001051.75636
Line Islands Corals viral fraction from water of Fanning (SRP000143)
107
32
-
Thr
TGT
[SRA]
>SRA1000986
SRR001051.78255
Line Islands Corals viral fraction from water of Fanning (SRP000143)
7
84
+
Met
CAT
[SRA]
>SRA1000987
SRR001051.79317
Line Islands Corals viral fraction from water of Fanning (SRP000143)
86
13
-
Lys
TTT
[SRA]
>SRA1000988
SRR001051.80207
Line Islands Corals viral fraction from water of Fanning (SRP000143)
97
22
-
Ile
TAT
[SRA]
>SRA1000989
SRR001051.80781
Line Islands Corals viral fraction from water of Fanning (SRP000143)
22
95
+
Pro
TGG
[SRA]
>SRA1000990
SRR001051.86014
Line Islands Corals viral fraction from water of Fanning (SRP000143)
99
23
-
Met
CAT
[SRA]
>SRA1000968
SRR001051.8635
Line Islands Corals viral fraction from water of Fanning (SRP000143)
75
1
-
Glu
CTC
[SRA]
>SRA1000991
SRR001051.88546
Line Islands Corals viral fraction from water of Fanning (SRP000143)
95
20
-
Phe
GAA
[SRA]
>SRA1000992
SRR001051.89751
Line Islands Corals viral fraction from water of Fanning (SRP000143)
80
6
-
Gly
GCC
[SRA]
>SRA1000993
SRR001051.90326
Line Islands Corals viral fraction from water of Fanning (SRP000143)
5
81
+
Pro
TGG
[SRA]
>SRA1000994
SRR001051.97430
Line Islands Corals viral fraction from water of Fanning (SRP000143)
40
115
+
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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