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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Marine Viruses from Sargasso Sea (SRP000130)
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1000270
SRR001038.127172
Marine Viruses from Sargasso Sea (SRP000130)
74
3
-
Asn
GTT
[SRA]
>SRA1000271
SRR001038.131482
Marine Viruses from Sargasso Sea (SRP000130)
13
89
+
Arg
TCT
[SRA]
>SRA1000272
SRR001038.132486
Marine Viruses from Sargasso Sea (SRP000130)
9
95
+
Tyr
GTA
[SRA]
>SRA1000259
SRR001038.14137
Marine Viruses from Sargasso Sea (SRP000130)
11
86
+
Trp
CCA
[SRA]
>SRA1000273
SRR001038.163907
Marine Viruses from Sargasso Sea (SRP000130)
105
29
-
Arg
TCT
[SRA]
>SRA1000274
SRR001038.164286
Marine Viruses from Sargasso Sea (SRP000130)
39
112
+
Gln
TTG
[SRA]
>SRA1000275
SRR001038.164650
Marine Viruses from Sargasso Sea (SRP000130)
34
105
+
Arg
TCT
[SRA]
>SRA1000276
SRR001038.177787
Marine Viruses from Sargasso Sea (SRP000130)
8
81
+
Asp
GTC
[SRA]
>SRA1000277
SRR001038.183353
Marine Viruses from Sargasso Sea (SRP000130)
13
85
+
Met
CAT
[SRA]
>SRA1000278
SRR001038.223542
Marine Viruses from Sargasso Sea (SRP000130)
10
86
+
Arg
TCT
[SRA]
>SRA1000279
SRR001038.236415
Marine Viruses from Sargasso Sea (SRP000130)
13
89
+
Arg
TCT
[SRA]
>SRA1000260
SRR001038.24469
Marine Viruses from Sargasso Sea (SRP000130)
31
104
+
Asn
GTT
[SRA]
>SRA1000280
SRR001038.249926
Marine Viruses from Sargasso Sea (SRP000130)
27
103
+
Arg
TCT
[SRA]
>SRA1000281
SRR001038.250246
Marine Viruses from Sargasso Sea (SRP000130)
16
92
+
Arg
TCT
[SRA]
>SRA1000261
SRR001038.25131
Marine Viruses from Sargasso Sea (SRP000130)
6
79
+
Thr
TGT
[SRA]
>SRA1000282
SRR001038.253328
Marine Viruses from Sargasso Sea (SRP000130)
4
78
+
Asn
GTT
[SRA]
>SRA1000283
SRR001038.259686
Marine Viruses from Sargasso Sea (SRP000130)
89
17
-
Asn
GTT
[SRA]
>SRA1000284
SRR001038.265358
Marine Viruses from Sargasso Sea (SRP000130)
3
76
+
Ile
TAT
[SRA]
>SRA1000285
SRR001038.275715
Marine Viruses from Sargasso Sea (SRP000130)
104
28
-
Met
CAT
[SRA]
>SRA1000286
SRR001038.278107
Marine Viruses from Sargasso Sea (SRP000130)
93
17
-
Arg
TCT
[SRA]
>SRA1000287
SRR001038.295834
Marine Viruses from Sargasso Sea (SRP000130)
92
18
-
Arg
ACG
[SRA]
>SRA1000288
SRR001038.298952
Marine Viruses from Sargasso Sea (SRP000130)
100
24
-
Ile
TAT
[SRA]
>SRA1000289
SRR001038.301039
Marine Viruses from Sargasso Sea (SRP000130)
97
22
-
Arg
TCT
[SRA]
>SRA1000262
SRR001038.30419
Marine Viruses from Sargasso Sea (SRP000130)
14
90
+
Arg
TCT
[SRA]
>SRA1000290
SRR001038.315179
Marine Viruses from Sargasso Sea (SRP000130)
100
29
-
Gly
TCC
[SRA]
>SRA1000291
SRR001038.327013
Marine Viruses from Sargasso Sea (SRP000130)
14
101
+
Asn
GTT
[SRA]
>SRA1000292
SRR001038.334617
Marine Viruses from Sargasso Sea (SRP000130)
96
24
-
Thr
TGT
[SRA]
>SRA1000293
SRR001038.350625
Marine Viruses from Sargasso Sea (SRP000130)
93
19
-
Cys
GCA
[SRA]
>SRA1000294
SRR001038.354147
Marine Viruses from Sargasso Sea (SRP000130)
106
21
-
Leu
TAA
[SRA]
>SRA1000295
SRR001038.369482
Marine Viruses from Sargasso Sea (SRP000130)
101
26
-
Gly
TCC
[SRA]
>SRA1000263
SRR001038.37022
Marine Viruses from Sargasso Sea (SRP000130)
33
108
+
Arg
ACG
[SRA]
>SRA1000296
SRR001038.388753
Marine Viruses from Sargasso Sea (SRP000130)
33
106
+
Lys
TTT
[SRA]
>SRA1000264
SRR001038.44935
Marine Viruses from Sargasso Sea (SRP000130)
11
87
+
Lys
TTT
[SRA]
>SRA1000258
SRR001038.5905
Marine Viruses from Sargasso Sea (SRP000130)
6
79
+
Thr
TGT
[SRA]
>SRA1000265
SRR001038.61913
Marine Viruses from Sargasso Sea (SRP000130)
99
12
-
Leu
TAA
[SRA]
>SRA1000266
SRR001038.72944
Marine Viruses from Sargasso Sea (SRP000130)
31
104
+
Asn
GTT
[SRA]
>SRA1000267
SRR001038.75898
Marine Viruses from Sargasso Sea (SRP000130)
100
24
-
Arg
TCT
[SRA]
>SRA1000268
SRR001038.85846
Marine Viruses from Sargasso Sea (SRP000130)
2
77
+
Ala
TGC
[SRA]
>SRA1000269
SRR001038.95921
Marine Viruses from Sargasso Sea (SRP000130)
12
84
+
Gln
TTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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