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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
Marine metagenome apSum_C1
HIT:
78 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV09003928
ADIF01000058
Marine metagenome apSum_C1
177
253
+
Arg
ACG
[ENA]
¡û
>ENV09003929
ADIF01000082
Marine metagenome apSum_C1
696
771
+
Ala
GGC
[ENA]
¡û
>ENV09003930
ADIF01000082
Marine metagenome apSum_C1
794
870
+
Glu
TTC
[ENA]
¡û
>ENV09003931
ADIF01000149
Marine metagenome apSum_C1
1986
2062
+
Ile
GAT
[ENA]
¡û
>ENV09003932
ADIF01000149
Marine metagenome apSum_C1
2141
2217
+
Ala
TGC
[ENA]
¡û
>ENV09003933
ADIF01000169
Marine metagenome apSum_C1
118
193
+
Ala
TGC
[ENA]
¡û
>ENV09003934
ADIF01000204
Marine metagenome apSum_C1
1275
1199
-
Met
CAT
[ENA]
¡û
>ENV09003935
ADIF01000215
Marine metagenome apSum_C1
541
615
+
Gln
TTG
[ENA]
¡û
>ENV09003936
ADIF01000419
Marine metagenome apSum_C1
608
523
-
Leu
GAG
[ENA]
¡û
>ENV09003937
ADIF01000420
Marine metagenome apSum_C1
1265
1341
+
Met
CAT
[ENA]
¡û
>ENV09003939
ADIF01000543
Marine metagenome apSum_C1
784
710
-
Gln
TTG
[ENA]
¡û
>ENV09003938
ADIF01000543
Marine metagenome apSum_C1
886
810
-
Met
CAT
[ENA]
¡û
>ENV09003940
ADIF01000820
Marine metagenome apSum_C1
775
850
+
Ala
TGC
[ENA]
¡û
>ENV09003941
ADIF01000820
Marine metagenome apSum_C1
894
970
+
Ile
GAT
[ENA]
¡û
>ENV09003942
ADIF01000838
Marine metagenome apSum_C1
378
295
-
Pseudo
GTA
[ENA]
¡û
>ENV09003943
ADIF01000978
Marine metagenome apSum_C1
446
361
-
Leu
TAA
[ENA]
¡û
>ENV09003944
ADIF01000986
Marine metagenome apSum_C1
806
883
+
Arg
TCT
[ENA]
¡û
>ENV09003947
ADIF01001420
Marine metagenome apSum_C1
462
388
-
Arg
TCT
[ENA]
¡û
>ENV09003946
ADIF01001420
Marine metagenome apSum_C1
567
492
-
Pro
TGG
[ENA]
¡û
>ENV09003945
ADIF01001420
Marine metagenome apSum_C1
724
638
-
Ser
GCT
[ENA]
¡û
>ENV09003948
ADIF01001445
Marine metagenome apSum_C1
1175
1251
+
Arg
ACG
[ENA]
¡û
>ENV09003950
ADIF01001571
Marine metagenome apSum_C1
408
332
-
Ile
GAT
[ENA]
¡û
>ENV09003949
ADIF01001571
Marine metagenome apSum_C1
597
522
-
Ala
TGC
[ENA]
¡û
>ENV09003951
ADIF01001633
Marine metagenome apSum_C1
206
281
+
Phe
GAA
[ENA]
¡û
>ENV09003952
ADIF01001857
Marine metagenome apSum_C1
74
159
+
Tyr
GTA
[ENA]
¡û
>ENV09003953
ADIF01001857
Marine metagenome apSum_C1
206
279
+
Gly
TCC
[ENA]
¡û
>ENV09003954
ADIF01002308
Marine metagenome apSum_C1
586
662
+
Met
CAT
[ENA]
¡û
>ENV09003955
ADIF01002464
Marine metagenome apSum_C1
632
546
-
Leu
TAA
[ENA]
¡û
>ENV09003957
ADIF01002586
Marine metagenome apSum_C1
210
134
-
Ile
GAT
[ENA]
¡û
>ENV09003956
ADIF01002586
Marine metagenome apSum_C1
338
263
-
Ala
TGC
[ENA]
¡û
>ENV09003958
ADIF01002754
Marine metagenome apSum_C1
450
536
+
Leu
TAA
[ENA]
¡û
>ENV09003959
ADIF01003126
Marine metagenome apSum_C1
44
120
+
Thr
TGT
[ENA]
¡û
>ENV09003960
ADIF01003207
Marine metagenome apSum_C1
279
203
-
Arg
ACG
[ENA]
¡û
>ENV09003961
ADIF01003280
Marine metagenome apSum_C1
41
116
+
Lys
TTT
[ENA]
¡û
>ENV09003962
ADIF01003780
Marine metagenome apSum_C1
660
584
-
Arg
ACG
[ENA]
¡û
>ENV09003963
ADIF01003807
Marine metagenome apSum_C1
24
100
+
Met
CAT
[ENA]
¡û
>ENV09003964
ADIF01003998
Marine metagenome apSum_C1
637
561
-
Thr
TGT
[ENA]
¡û
>ENV09003965
ADIF01004113
Marine metagenome apSum_C1
516
440
-
Arg
ACG
[ENA]
¡û
>ENV09003966
ADIF01004246
Marine metagenome apSum_C1
57
133
+
Pro
GGG
[ENA]
¡û
>ENV09003967
ADIF01004306
Marine metagenome apSum_C1
627
552
-
Thr
TGT
[ENA]
¡û
>ENV09003970
ADIF01004328
Marine metagenome apSum_C1
545
471
-
Thr
GGT
[ENA]
¡û
>ENV09003969
ADIF01004328
Marine metagenome apSum_C1
629
554
-
Gly
TCC
[ENA]
¡û
>ENV09003968
ADIF01004328
Marine metagenome apSum_C1
762
680
-
Tyr
GTA
[ENA]
¡û
>ENV09003971
ADIF01004663
Marine metagenome apSum_C1
492
416
-
Asp
GTC
[ENA]
¡û
>ENV09003972
ADIF01004804
Marine metagenome apSum_C1
47
136
+
Ser
TGA
[ENA]
¡û
>ENV09003973
ADIF01004955
Marine metagenome apSum_C1
258
343
+
Leu
CAG
[ENA]
¡û
>ENV09003974
ADIF01005078
Marine metagenome apSum_C1
309
220
-
Ser
GGA
[ENA]
¡û
>ENV09003975
ADIF01005265
Marine metagenome apSum_C1
590
515
-
Thr
TGT
[ENA]
¡û
>ENV09003976
ADIF01005377
Marine metagenome apSum_C1
362
286
-
Met
CAT
[ENA]
¡û
>ENV09003977
ADIF01005721
Marine metagenome apSum_C1
363
439
+
Arg
TCG
[ENA]
¡û
>ENV09003978
ADIF01006103
Marine metagenome apSum_C1
378
454
+
Arg
TCG
[ENA]
¡û
>ENV09003979
ADIF01006300
Marine metagenome apSum_C1
227
301
+
Gly
GCC
[ENA]
¡û
>ENV09003980
ADIF01006472
Marine metagenome apSum_C1
72
147
+
Lys
TTT
[ENA]
¡û
>ENV09003981
ADIF01006744
Marine metagenome apSum_C1
247
171
-
Pro
TGG
[ENA]
¡û
>ENV09003982
ADIF01006972
Marine metagenome apSum_C1
111
184
+
Gly
CCC
[ENA]
¡û
>ENV09003983
ADIF01007103
Marine metagenome apSum_C1
150
224
+
Asn
GTT
[ENA]
¡û
>ENV09003984
ADIF01007372
Marine metagenome apSum_C1
163
87
-
Pro
TGG
[ENA]
¡û
>ENV09003985
ADIF01007616
Marine metagenome apSum_C1
159
74
-
Leu
CAG
[ENA]
¡û
>ENV09003986
ADIF01007936
Marine metagenome apSum_C1
736
661
-
Thr
TGT
[ENA]
¡û
>ENV09003987
ADIF01008168
Marine metagenome apSum_C1
474
400
-
Phe
GAA
[ENA]
¡û
>ENV09003988
ADIF01008200
Marine metagenome apSum_C1
494
420
-
Arg
TCG
[ENA]
¡û
>ENV09003989
ADIF01008254
Marine metagenome apSum_C1
455
539
+
Leu
TAA
[ENA]
¡û
>ENV09003990
ADIF01008270
Marine metagenome apSum_C1
610
524
-
Leu
TAA
[ENA]
¡û
>ENV09003991
ADIF01008352
Marine metagenome apSum_C1
730
640
-
Ser
GGA
[ENA]
¡û
>ENV09003992
ADIF01008439
Marine metagenome apSum_C1
275
199
-
Arg
TCT
[ENA]
¡û
>ENV09003993
ADIF01008442
Marine metagenome apSum_C1
397
313
-
Leu
TAA
[ENA]
¡û
>ENV09003994
ADIF01008661
Marine metagenome apSum_C1
283
199
-
Leu
CAA
[ENA]
¡û
>ENV09003995
ADIF01008679
Marine metagenome apSum_C1
563
639
+
Met
CAT
[ENA]
¡û
>ENV09003996
ADIF01008707
Marine metagenome apSum_C1
458
534
+
His
GTG
[ENA]
¡û
>ENV09003997
ADIF01008791
Marine metagenome apSum_C1
99
14
-
Leu
CAA
[ENA]
¡û
>ENV09003998
ADIF01009034
Marine metagenome apSum_C1
338
264
-
Met
CAT
[ENA]
¡û
>ENV09003999
ADIF01009218
Marine metagenome apSum_C1
229
154
-
Val
TAC
[ENA]
¡û
>ENV09004000
ADIF01009336
Marine metagenome apSum_C1
291
216
-
Val
TAC
[ENA]
¡û
>ENV09004001
ADIF01009750
Marine metagenome apSum_C1
67
141
+
Phe
GAA
[ENA]
¡û
>ENV09004002
ADIF01009789
Marine metagenome apSum_C1
7
91
+
Leu
CAA
[ENA]
¡û
>ENV09004003
ADIF01009983
Marine metagenome apSum_C1
194
119
-
Thr
TGT
[ENA]
¡û
>ENV09004005
ADIF01010131
Marine metagenome apSum_C1
231
155
-
Asp
GTC
[ENA]
¡û
>ENV09004004
ADIF01010131
Marine metagenome apSum_C1
395
320
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK