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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
Marine metagenome gcontig_contig00001
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV09001608
ABVN01002298
Marine metagenome gcontig_contig00001
107
32
-
Gly
TCC
[ENA]
¡û
>ENV09001609
ABVN01003123
Marine metagenome gcontig_contig00001
108
18
-
Ser
GCT
[ENA]
¡û
>ENV09001610
ABVN01003589
Marine metagenome gcontig_contig00001
39
114
+
Glu
TTC
[ENA]
¡û
>ENV09001611
ABVN01005702
Marine metagenome gcontig_contig00001
4
91
+
Ser
TGA
[ENA]
¡û
>ENV09001612
ABVN01005999
Marine metagenome gcontig_contig00001
132
50
-
Tyr
GTA
[ENA]
¡û
>ENV09001613
ABVN01010229
Marine metagenome gcontig_contig00001
25
109
+
Tyr
GTA
[ENA]
¡û
>ENV09001614
ABVN01011507
Marine metagenome gcontig_contig00001
128
53
-
Ile
GAT
[ENA]
¡û
>ENV09001615
ABVN01015958
Marine metagenome gcontig_contig00001
40
113
+
Gln
TTG
[ENA]
¡û
>ENV09001616
ABVN01015963
Marine metagenome gcontig_contig00001
2
85
+
Leu
TAG
[ENA]
¡û
>ENV09001617
ABVN01017417
Marine metagenome gcontig_contig00001
95
24
-
Gly
CCC
[ENA]
¡û
>ENV09001618
ABVN01018018
Marine metagenome gcontig_contig00001
260
189
-
Val
CAC
[ENA]
¡û
>ENV09001619
ABVN01020799
Marine metagenome gcontig_contig00001
29
101
+
Thr
CGT
[ENA]
¡û
>ENV09001620
ABVN01022734
Marine metagenome gcontig_contig00001
17
106
+
Ser
GCT
[ENA]
¡û
>ENV09001621
ABVN01023337
Marine metagenome gcontig_contig00001
108
25
-
Tyr
GTA
[ENA]
¡û
>ENV09001622
ABVN01024592
Marine metagenome gcontig_contig00001
105
21
-
Tyr
GTA
[ENA]
¡û
>ENV09001623
ABVN01031288
Marine metagenome gcontig_contig00001
34
105
+
Gln
TTG
[ENA]
¡û
>ENV09001624
ABVN01031509
Marine metagenome gcontig_contig00001
82
6
-
Trp
CCA
[ENA]
¡û
>ENV09001625
ABVN01032158
Marine metagenome gcontig_contig00001
212
286
+
Met
CAT
[ENA]
¡û
>ENV09001626
ABVN01032195
Marine metagenome gcontig_contig00001
80
6
-
Ala
GGC
[ENA]
¡û
>ENV09001627
ABVN01032457
Marine metagenome gcontig_contig00001
140
70
-
Gly
TCC
[ENA]
¡û
>ENV09001628
ABVN01032572
Marine metagenome gcontig_contig00001
135
59
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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