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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
Sediment metagenome
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV11100245
ADZX01000893
Sediment metagenome
40
124
+
Leu
CAA
[ENA]
¡û
>WENV11100197
ADZX01000047
Sediment metagenome
66
142
+
Phe
GAA
[ENA]
¡û
>WENV11100229
ADZX01000655
Sediment metagenome
84
9
-
Phe
GAA
[ENA]
¡û
>WENV11100244
ADZX01000865
Sediment metagenome
84
156
+
Lys
TTT
[ENA]
¡û
>WENV11100205
ADZX01000305
Sediment metagenome
129
210
+
Leu
CAA
[ENA]
¡û
>WENV11100243
ADZX01000844
Sediment metagenome
163
238
+
Met
CAT
[ENA]
¡û
>WENV11100207
ADZX01000326
Sediment metagenome
170
97
-
Met
CAT
[ENA]
¡û
>WENV11100206
ADZX01000305
Sediment metagenome
351
266
-
Tyr
GTA
[ENA]
¡û
>WENV11100211
ADZX01000389
Sediment metagenome
630
555
-
Ala
GGC
[ENA]
¡û
>WENV11100231
ADZX01000670
Sediment metagenome
649
574
-
Ala
TGC
[ENA]
¡û
>WENV11100230
ADZX01000670
Sediment metagenome
731
655
-
Ile
GAT
[ENA]
¡û
>WENV11100215
ADZX01000421
Sediment metagenome
768
840
+
Gln
CTG
[ENA]
¡û
>WENV11100220
ADZX01000562
Sediment metagenome
830
756
-
Val
GAC
[ENA]
¡û
>WENV11100232
ADZX01000677
Sediment metagenome
853
770
-
Leu
TAG
[ENA]
¡û
>WENV11100201
ADZX01000253
Sediment metagenome
956
1040
+
Leu
CAA
[ENA]
¡û
>WENV11100200
ADZX01000093
Sediment metagenome
1073
997
-
Met
CAT
[ENA]
¡û
>WENV11100199
ADZX01000052
Sediment metagenome
1107
1183
+
Ile
GAT
[ENA]
¡û
>WENV11100228
ADZX01000636
Sediment metagenome
1129
1045
-
Leu
GAG
[ENA]
¡û
>WENV11100202
ADZX01000253
Sediment metagenome
1165
1239
+
Gly
GCC
[ENA]
¡û
>WENV11100236
ADZX01000765
Sediment metagenome
1455
1371
-
Leu
GAG
[ENA]
¡û
>WENV11100216
ADZX01000429
Sediment metagenome
1565
1640
+
Ala
GGC
[ENA]
¡û
>WENV11100204
ADZX01000304
Sediment metagenome
2053
2137
+
Leu
CAG
[ENA]
¡û
>WENV11100213
ADZX01000409
Sediment metagenome
2104
2177
+
Gly
GCC
[ENA]
¡û
>WENV11100235
ADZX01000753
Sediment metagenome
2203
2127
-
Val
GAC
[ENA]
¡û
>WENV11100210
ADZX01000356
Sediment metagenome
2239
2165
-
Gly
ACC
[ENA]
¡û
>WENV11100234
ADZX01000753
Sediment metagenome
2346
2259
-
Ser
CGA
[ENA]
¡û
>WENV11100233
ADZX01000753
Sediment metagenome
2431
2502
+
Glu
TTC
[ENA]
¡û
>WENV11100203
ADZX01000270
Sediment metagenome
2660
2733
+
Lys
TTT
[ENA]
¡û
>WENV11100217
ADZX01000431
Sediment metagenome
2683
2609
-
Glu
TTC
[ENA]
¡û
>WENV11100223
ADZX01000599
Sediment metagenome
2776
2861
+
Leu
CAA
[ENA]
¡û
>WENV11100198
ADZX01000047
Sediment metagenome
2781
2853
+
Arg
TCG
[ENA]
¡û
>WENV11100218
ADZX01000447
Sediment metagenome
3948
3873
-
Val
TAC
[ENA]
¡û
>WENV11100219
ADZX01000558
Sediment metagenome
4293
4207
-
Leu
GAG
[ENA]
¡û
>WENV11100214
ADZX01000415
Sediment metagenome
4351
4426
+
Met
CAT
[ENA]
¡û
>WENV11100209
ADZX01000356
Sediment metagenome
4838
4761
-
Pro
TGG
[ENA]
¡û
>WENV11100208
ADZX01000356
Sediment metagenome
4941
4869
-
Pseudo
GTG
[ENA]
¡û
>WENV11100196
ADZX01000007
Sediment metagenome
6312
6237
-
Lys
CTT
[ENA]
¡û
>WENV11100195
ADZX01000005
Sediment metagenome
6447
6371
-
Met
CAT
[ENA]
¡û
>WENV11100224
ADZX01000600
Sediment metagenome
6932
6857
-
Ala
CGC
[ENA]
¡û
>WENV11100239
ADZX01000767
Sediment metagenome
7376
7293
-
Leu
TAG
[ENA]
¡û
>WENV11100238
ADZX01000767
Sediment metagenome
7485
7399
-
Tyr
GTA
[ENA]
¡û
>WENV11100237
ADZX01000767
Sediment metagenome
7653
7578
-
Thr
TGT
[ENA]
¡û
>WENV11100246
ADZX01000902
Sediment metagenome
7714
7641
-
Ile
TAT
[ENA]
¡û
>WENV11100227
ADZX01000636
Sediment metagenome
8072
7996
-
Val
TAC
[ENA]
¡û
>WENV11100226
ADZX01000636
Sediment metagenome
8253
8179
-
Arg
TCT
[ENA]
¡û
>WENV11100222
ADZX01000582
Sediment metagenome
8360
8433
+
His
GTG
[ENA]
¡û
>WENV11100212
ADZX01000398
Sediment metagenome
9417
9492
+
Ala
CGC
[ENA]
¡û
>WENV11100242
ADZX01000808
Sediment metagenome
10652
10568
-
Leu
TAG
[ENA]
¡û
>WENV11100225
ADZX01000636
Sediment metagenome
12826
12913
+
Ser
TGA
[ENA]
¡û
>WENV11100241
ADZX01000783
Sediment metagenome
13311
13237
-
Trp
CCA
[ENA]
¡û
>WENV11100240
ADZX01000783
Sediment metagenome
17192
17116
-
His
GTG
[ENA]
¡û
>WENV11100221
ADZX01000567
Sediment metagenome
22424
22351
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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