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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Tampa Bay phage from induction experiment (SRP001112)
HIT:
78 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1013853
SRR023774.104172
Tampa Bay phage from induction experiment (SRP001112)
15
91
+
Arg
TCT
[SRA]
>SRA1013854
SRR023774.106018
Tampa Bay phage from induction experiment (SRP001112)
12
87
+
Met
CAT
[SRA]
>SRA1013855
SRR023774.107240
Tampa Bay phage from induction experiment (SRP001112)
84
14
-
Gly
TCC
[SRA]
>SRA1013856
SRR023774.111631
Tampa Bay phage from induction experiment (SRP001112)
84
14
-
Gly
TCC
[SRA]
>SRA1013857
SRR023774.112134
Tampa Bay phage from induction experiment (SRP001112)
30
116
+
Leu
TAA
[SRA]
>SRA1013858
SRR023774.117898
Tampa Bay phage from induction experiment (SRP001112)
15
91
+
Arg
TCT
[SRA]
>SRA1013859
SRR023774.118274
Tampa Bay phage from induction experiment (SRP001112)
74
2
-
Ala
TGC
[SRA]
>SRA1013860
SRR023774.122004
Tampa Bay phage from induction experiment (SRP001112)
11
99
+
Leu
TAA
[SRA]
>SRA1013861
SRR023774.122966
Tampa Bay phage from induction experiment (SRP001112)
100
26
-
Arg
CCT
[SRA]
>SRA1013862
SRR023774.128593
Tampa Bay phage from induction experiment (SRP001112)
11
98
+
Leu
TAA
[SRA]
>SRA1013863
SRR023774.141646
Tampa Bay phage from induction experiment (SRP001112)
22
94
+
Met
CAT
[SRA]
>SRA1013823
SRR023774.14587
Tampa Bay phage from induction experiment (SRP001112)
36
112
+
Arg
ACG
[SRA]
>SRA1013864
SRR023774.150616
Tampa Bay phage from induction experiment (SRP001112)
30
105
+
Ile
TAT
[SRA]
>SRA1013865
SRR023774.155104
Tampa Bay phage from induction experiment (SRP001112)
5
79
+
Pro
TGG
[SRA]
>SRA1013866
SRR023774.155560
Tampa Bay phage from induction experiment (SRP001112)
29
111
+
Leu
TAG
[SRA]
>SRA1013824
SRR023774.16686
Tampa Bay phage from induction experiment (SRP001112)
13
89
+
Met
CAT
[SRA]
>SRA1013867
SRR023774.171081
Tampa Bay phage from induction experiment (SRP001112)
85
12
-
Met
CAT
[SRA]
>SRA1013825
SRR023774.17294
Tampa Bay phage from induction experiment (SRP001112)
2
78
+
Arg
TCT
[SRA]
>SRA1013868
SRR023774.184077
Tampa Bay phage from induction experiment (SRP001112)
7
82
+
Asn
GTT
[SRA]
>SRA1013869
SRR023774.185011
Tampa Bay phage from induction experiment (SRP001112)
27
109
+
Tyr
GTA
[SRA]
>SRA1013870
SRR023774.188130
Tampa Bay phage from induction experiment (SRP001112)
90
2
-
Leu
TAA
[SRA]
>SRA1013871
SRR023774.188228
Tampa Bay phage from induction experiment (SRP001112)
75
1
-
Met
CAT
[SRA]
>SRA1013872
SRR023774.190980
Tampa Bay phage from induction experiment (SRP001112)
18
94
+
His
GTG
[SRA]
>SRA1013873
SRR023774.199154
Tampa Bay phage from induction experiment (SRP001112)
32
106
+
Ile
TAT
[SRA]
>SRA1013874
SRR023774.206318
Tampa Bay phage from induction experiment (SRP001112)
32
108
+
Arg
TCT
[SRA]
>SRA1013875
SRR023774.214436
Tampa Bay phage from induction experiment (SRP001112)
22
109
+
Leu
TAA
[SRA]
>SRA1013876
SRR023774.214972
Tampa Bay phage from induction experiment (SRP001112)
44
118
+
Val
TAC
[SRA]
>SRA1013877
SRR023774.218730
Tampa Bay phage from induction experiment (SRP001112)
25
111
+
Ser
TGA
[SRA]
>SRA1013878
SRR023774.222837
Tampa Bay phage from induction experiment (SRP001112)
75
1
-
Ile
TAT
[SRA]
>SRA1013879
SRR023774.230041
Tampa Bay phage from induction experiment (SRP001112)
2
76
+
Cys
GCA
[SRA]
>SRA1013880
SRR023774.235828
Tampa Bay phage from induction experiment (SRP001112)
24
109
+
Ser
TGA
[SRA]
>SRA1013881
SRR023774.239797
Tampa Bay phage from induction experiment (SRP001112)
84
9
-
Asn
GTT
[SRA]
>SRA1013882
SRR023774.241194
Tampa Bay phage from induction experiment (SRP001112)
80
6
-
Val
TAC
[SRA]
>SRA1013883
SRR023774.251285
Tampa Bay phage from induction experiment (SRP001112)
118
47
-
Gly
TCC
[SRA]
>SRA1013884
SRR023774.252495
Tampa Bay phage from induction experiment (SRP001112)
48
119
+
Thr
AGT
[SRA]
>SRA1013885
SRR023774.257152
Tampa Bay phage from induction experiment (SRP001112)
100
24
-
Thr
TGT
[SRA]
>SRA1013886
SRR023774.257448
Tampa Bay phage from induction experiment (SRP001112)
46
119
+
Cys
GCA
[SRA]
>SRA1013887
SRR023774.264630
Tampa Bay phage from induction experiment (SRP001112)
2
88
+
Leu
TAA
[SRA]
>SRA1013888
SRR023774.264876
Tampa Bay phage from induction experiment (SRP001112)
84
9
-
Asn
GTT
[SRA]
>SRA1013889
SRR023774.270889
Tampa Bay phage from induction experiment (SRP001112)
81
8
-
Arg
TCT
[SRA]
>SRA1013890
SRR023774.271594
Tampa Bay phage from induction experiment (SRP001112)
91
2
-
Ser
TGA
[SRA]
>SRA1013891
SRR023774.275028
Tampa Bay phage from induction experiment (SRP001112)
113
25
-
Leu
TAA
[SRA]
>SRA1013892
SRR023774.275223
Tampa Bay phage from induction experiment (SRP001112)
23
100
+
Asn
GTT
[SRA]
>SRA1013893
SRR023774.280195
Tampa Bay phage from induction experiment (SRP001112)
87
11
-
Val
TAC
[SRA]
>SRA1013894
SRR023774.280328
Tampa Bay phage from induction experiment (SRP001112)
14
89
+
Arg
TCT
[SRA]
>SRA1013826
SRR023774.28162
Tampa Bay phage from induction experiment (SRP001112)
96
23
-
Gly
TCC
[SRA]
>SRA1013895
SRR023774.283547
Tampa Bay phage from induction experiment (SRP001112)
96
22
-
Met
CAT
[SRA]
>SRA1013896
SRR023774.284692
Tampa Bay phage from induction experiment (SRP001112)
119
40
-
Leu
CAA
[SRA]
>SRA1013827
SRR023774.28528
Tampa Bay phage from induction experiment (SRP001112)
31
105
+
Asn
GTT
[SRA]
>SRA1013897
SRR023774.290199
Tampa Bay phage from induction experiment (SRP001112)
97
22
-
Val
TAC
[SRA]
>SRA1013820
SRR023774.3791
Tampa Bay phage from induction experiment (SRP001112)
30
105
+
Ile
TAT
[SRA]
>SRA1013821
SRR023774.4276
Tampa Bay phage from induction experiment (SRP001112)
80
8
-
Ala
TGC
[SRA]
>SRA1013828
SRR023774.43225
Tampa Bay phage from induction experiment (SRP001112)
27
109
+
Tyr
GTA
[SRA]
>SRA1013829
SRR023774.48337
Tampa Bay phage from induction experiment (SRP001112)
7
83
+
Arg
GCG
[SRA]
>SRA1013830
SRR023774.50107
Tampa Bay phage from induction experiment (SRP001112)
6
82
+
Arg
TCT
[SRA]
>SRA1013831
SRR023774.52611
Tampa Bay phage from induction experiment (SRP001112)
91
5
-
Leu
TAA
[SRA]
>SRA1013832
SRR023774.57949
Tampa Bay phage from induction experiment (SRP001112)
104
30
-
Gln
TTG
[SRA]
>SRA1013833
SRR023774.59393
Tampa Bay phage from induction experiment (SRP001112)
13
92
+
Arg
TCT
[SRA]
>SRA1013834
SRR023774.59633
Tampa Bay phage from induction experiment (SRP001112)
26
110
+
Leu
TAA
[SRA]
>SRA1013835
SRR023774.60057
Tampa Bay phage from induction experiment (SRP001112)
107
32
-
Glu
TTC
[SRA]
>SRA1013836
SRR023774.60304
Tampa Bay phage from induction experiment (SRP001112)
25
100
+
Met
CAT
[SRA]
>SRA1013837
SRR023774.63171
Tampa Bay phage from induction experiment (SRP001112)
93
17
-
Arg
TCT
[SRA]
>SRA1013838
SRR023774.67586
Tampa Bay phage from induction experiment (SRP001112)
74
1
-
His
GTG
[SRA]
>SRA1013839
SRR023774.71389
Tampa Bay phage from induction experiment (SRP001112)
50
121
+
Val
TAC
[SRA]
>SRA1013840
SRR023774.73446
Tampa Bay phage from induction experiment (SRP001112)
6
82
+
Ile
TAT
[SRA]
>SRA1013822
SRR023774.7572
Tampa Bay phage from induction experiment (SRP001112)
7
93
+
Leu
TAA
[SRA]
>SRA1013841
SRR023774.77513
Tampa Bay phage from induction experiment (SRP001112)
22
110
+
Leu
TAA
[SRA]
>SRA1013842
SRR023774.80295
Tampa Bay phage from induction experiment (SRP001112)
94
8
-
Leu
TAA
[SRA]
>SRA1013843
SRR023774.80319
Tampa Bay phage from induction experiment (SRP001112)
93
17
-
Arg
TCT
[SRA]
>SRA1013844
SRR023774.81365
Tampa Bay phage from induction experiment (SRP001112)
84
10
-
Ile
TAT
[SRA]
>SRA1013845
SRR023774.84220
Tampa Bay phage from induction experiment (SRP001112)
26
101
+
Asn
GTT
[SRA]
>SRA1013846
SRR023774.87251
Tampa Bay phage from induction experiment (SRP001112)
15
87
+
Asn
GTT
[SRA]
>SRA1013847
SRR023774.90801
Tampa Bay phage from induction experiment (SRP001112)
16
93
+
Lys
TTT
[SRA]
>SRA1013848
SRR023774.90920
Tampa Bay phage from induction experiment (SRP001112)
113
31
-
Leu
TAG
[SRA]
>SRA1013849
SRR023774.93065
Tampa Bay phage from induction experiment (SRP001112)
89
2
-
Leu
TAA
[SRA]
>SRA1013850
SRR023774.93679
Tampa Bay phage from induction experiment (SRP001112)
85
14
-
Gly
TCC
[SRA]
>SRA1013851
SRR023774.98663
Tampa Bay phage from induction experiment (SRP001112)
28
103
+
Gly
GCC
[SRA]
>SRA1013852
SRR023774.99130
Tampa Bay phage from induction experiment (SRP001112)
97
23
-
Ala
TGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK