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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Thermoplasmatales archaeon A-plasma AplasmaContig10144
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV09002273
ACXK01000024
Thermoplasmatales archaeon A-plasma AplasmaContig10144
3416
3344
-
Val
GAC
[ENA]
¡û
>ENV09002274
ACXK01000038
Thermoplasmatales archaeon A-plasma AplasmaContig10144
1960
2035
+
Arg
GCG
[ENA]
¡û
>ENV09002277
ACXK01000041
Thermoplasmatales archaeon A-plasma AplasmaContig10144
3994
3919
-
Gln
CTG
[ENA]
¡û
>ENV09002275
ACXK01000041
Thermoplasmatales archaeon A-plasma AplasmaContig10144
6544
6619
+
Asn
GTT
[ENA]
¡û
>ENV09002276
ACXK01000041
Thermoplasmatales archaeon A-plasma AplasmaContig10144
6771
6844
+
Met
CAT
[ENA]
¡û
>ENV09002278
ACXK01000042
Thermoplasmatales archaeon A-plasma AplasmaContig10144
5073
4999
-
Lys
TTT
[ENA]
¡û
>ENV09002279
ACXK01000045
Thermoplasmatales archaeon A-plasma AplasmaContig10144
13204
13277
+
Val
CAC
[ENA]
¡û
>ENV09002282
ACXK01000051
Thermoplasmatales archaeon A-plasma AplasmaContig10144
745
674
-
Ala
CGC
[ENA]
¡û
>ENV09002280
ACXK01000051
Thermoplasmatales archaeon A-plasma AplasmaContig10144
38521
38593
+
Gln
TTG
[ENA]
¡û
>ENV09002281
ACXK01000051
Thermoplasmatales archaeon A-plasma AplasmaContig10144
42249
42322
+
Phe
GAA
[ENA]
¡û
>ENV09002283
ACXK01000052
Thermoplasmatales archaeon A-plasma AplasmaContig10144
4870
4794
-
Arg
TCT
[ENA]
¡û
>ENV09002285
ACXK01000057
Thermoplasmatales archaeon A-plasma AplasmaContig10144
13331
13259
-
Ala
GGC
[ENA]
¡û
>ENV09002284
ACXK01000057
Thermoplasmatales archaeon A-plasma AplasmaContig10144
105878
105951
+
Val
TAC
[ENA]
¡û
>ENV09002286
ACXK01000058
Thermoplasmatales archaeon A-plasma AplasmaContig10144
510
439
-
Ala
TGC
[ENA]
¡û
>ENV09002289
ACXK01000064
Thermoplasmatales archaeon A-plasma AplasmaContig10144
2787
2713
-
Lys
CTT
[ENA]
¡û
>ENV09002287
ACXK01000064
Thermoplasmatales archaeon A-plasma AplasmaContig10144
45382
45455
+
Lys
TTT
[ENA]
¡û
>ENV09002288
ACXK01000064
Thermoplasmatales archaeon A-plasma AplasmaContig10144
56601
56676
+
Met
CAT
[ENA]
¡û
>ENV09002291
ACXK01000065
Thermoplasmatales archaeon A-plasma AplasmaContig10144
22392
22320
-
Arg
CCG
[ENA]
¡û
>ENV09002290
ACXK01000065
Thermoplasmatales archaeon A-plasma AplasmaContig10144
39068
38994
-
Arg
TCG
[ENA]
¡û
>ENV09002293
ACXK01000067
Thermoplasmatales archaeon A-plasma AplasmaContig10144
21225
21153
-
Thr
CGT
[ENA]
¡û
>ENV09002292
ACXK01000067
Thermoplasmatales archaeon A-plasma AplasmaContig10144
47600
47514
-
Leu
TAA
[ENA]
¡û
>ENV09002298
ACXK01000072
Thermoplasmatales archaeon A-plasma AplasmaContig10144
15287
15201
-
Leu
CAA
[ENA]
¡û
>ENV09002294
ACXK01000072
Thermoplasmatales archaeon A-plasma AplasmaContig10144
31068
31141
+
Met
CAT
[ENA]
¡û
>ENV09002297
ACXK01000072
Thermoplasmatales archaeon A-plasma AplasmaContig10144
33235
33161
-
Asn
GTT
[ENA]
¡û
>ENV09002295
ACXK01000072
Thermoplasmatales archaeon A-plasma AplasmaContig10144
37068
37140
+
Gln
CTG
[ENA]
¡û
>ENV09002296
ACXK01000072
Thermoplasmatales archaeon A-plasma AplasmaContig10144
49467
49541
+
Pseudo
GTG
[ENA]
¡û
>ENV09002300
ACXK01000076
Thermoplasmatales archaeon A-plasma AplasmaContig10144
8250
8179
-
Pseudo
GCA
[ENA]
¡û
>ENV09002299
ACXK01000076
Thermoplasmatales archaeon A-plasma AplasmaContig10144
22707
22789
+
Ser
GCT
[ENA]
¡û
>ENV09002301
ACXK01000083
Thermoplasmatales archaeon A-plasma AplasmaContig10144
564
648
+
Ser
GGA
[ENA]
¡û
>ENV09002302
ACXK01000087
Thermoplasmatales archaeon A-plasma AplasmaContig10144
950
875
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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