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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Thermoplasmatales archaeon I-plasma
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV09002334
ACXM01000001
Thermoplasmatales archaeon I-plasma
37371
37299
-
Val
GAC
[ENA]
¡û
>ENV09002333
ACXM01000001
Thermoplasmatales archaeon I-plasma
114823
114898
+
Gly
TCC
[ENA]
¡û
>ENV09002345
ACXM01000003
Thermoplasmatales archaeon I-plasma
1596
1512
-
Leu
CAA
[ENA]
¡û
>ENV09002344
ACXM01000003
Thermoplasmatales archaeon I-plasma
18563
18486
-
Thr
GGT
[ENA]
¡û
>ENV09002343
ACXM01000003
Thermoplasmatales archaeon I-plasma
87528
87444
-
Leu
TAG
[ENA]
¡û
>ENV09002335
ACXM01000003
Thermoplasmatales archaeon I-plasma
125325
125396
+
Ala
GGC
[ENA]
¡û
>ENV09002336
ACXM01000003
Thermoplasmatales archaeon I-plasma
135169
135244
+
Pseudo
GTG
[ENA]
¡û
>ENV09002337
ACXM01000003
Thermoplasmatales archaeon I-plasma
272341
272415
+
Met
CAT
[ENA]
¡û
>ENV09002338
ACXM01000003
Thermoplasmatales archaeon I-plasma
311158
311242
+
Leu
GAG
[ENA]
¡û
>ENV09002342
ACXM01000003
Thermoplasmatales archaeon I-plasma
339753
339678
-
Lys
CTT
[ENA]
¡û
>ENV09002341
ACXM01000003
Thermoplasmatales archaeon I-plasma
399071
398996
-
Arg
GCG
[ENA]
¡û
>ENV09002339
ACXM01000003
Thermoplasmatales archaeon I-plasma
408639
408716
+
Arg
TCT
[ENA]
¡û
>ENV09002340
ACXM01000003
Thermoplasmatales archaeon I-plasma
451138
451064
-
Gln
CTG
[ENA]
¡û
>ENV09002356
ACXM01000005
Thermoplasmatales archaeon I-plasma
763
690
-
Ala
CGC
[ENA]
¡û
>ENV09002346
ACXM01000005
Thermoplasmatales archaeon I-plasma
6342
6425
+
Ser
TGA
[ENA]
¡û
>ENV09002347
ACXM01000005
Thermoplasmatales archaeon I-plasma
103266
103342
+
Arg
CCT
[ENA]
¡û
>ENV09002355
ACXM01000005
Thermoplasmatales archaeon I-plasma
129868
129796
-
Phe
GAA
[ENA]
¡û
>ENV09002348
ACXM01000005
Thermoplasmatales archaeon I-plasma
164384
164468
+
Leu
CAG
[ENA]
¡û
>ENV09002349
ACXM01000005
Thermoplasmatales archaeon I-plasma
192725
192801
+
Met
CAT
[ENA]
¡û
>ENV09002354
ACXM01000005
Thermoplasmatales archaeon I-plasma
194932
194860
-
Asn
GTT
[ENA]
¡û
>ENV09002350
ACXM01000005
Thermoplasmatales archaeon I-plasma
204723
204803
+
Ser
GCT
[ENA]
¡û
>ENV09002353
ACXM01000005
Thermoplasmatales archaeon I-plasma
238479
238395
-
Leu
TAA
[ENA]
¡û
>ENV09002351
ACXM01000005
Thermoplasmatales archaeon I-plasma
240864
240936
+
Gln
TTG
[ENA]
¡û
>ENV09002352
ACXM01000005
Thermoplasmatales archaeon I-plasma
351020
351092
+
Asp
GTC
[ENA]
¡û
>ENV09002357
ACXM01000006
Thermoplasmatales archaeon I-plasma
66999
67072
+
Lys
TTT
[ENA]
¡û
>ENV09002366
ACXM01000006
Thermoplasmatales archaeon I-plasma
159366
159292
-
Arg
CCG
[ENA]
¡û
>ENV09002358
ACXM01000006
Thermoplasmatales archaeon I-plasma
165014
165086
+
Val
CAC
[ENA]
¡û
>ENV09002365
ACXM01000006
Thermoplasmatales archaeon I-plasma
190436
190360
-
Arg
TCG
[ENA]
¡û
>ENV09002359
ACXM01000006
Thermoplasmatales archaeon I-plasma
190563
190636
+
Gly
GCC
[ENA]
¡û
>ENV09002360
ACXM01000006
Thermoplasmatales archaeon I-plasma
215733
215808
+
Pseudo
GGG
[ENA]
¡û
>ENV09002361
ACXM01000006
Thermoplasmatales archaeon I-plasma
336403
336474
+
Ala
TGC
[ENA]
¡û
>ENV09002362
ACXM01000006
Thermoplasmatales archaeon I-plasma
337195
337280
+
Ser
CGA
[ENA]
¡û
>ENV09002364
ACXM01000006
Thermoplasmatales archaeon I-plasma
385790
385718
-
Val
TAC
[ENA]
¡û
>ENV09002363
ACXM01000006
Thermoplasmatales archaeon I-plasma
471993
471922
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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