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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
HIT:
28 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1005411
SRR013515.14793
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
230
155
-
Ile
TAT
[SRA]
>SRA1005412
SRR013516.18396
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
208
134
-
Gln
TTG
[SRA]
>SRA1005413
SRR013517.1760
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
120
196
+
Arg
TCT
[SRA]
>SRA1005419
SRR013519.13559
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
134
45
-
Ser
GCT
[SRA]
>SRA1005420
SRR013519.15112
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
66
141
+
Glu
TTC
[SRA]
>SRA1005414
SRR013519.1999
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
73
1
-
Gln
TTG
[SRA]
>SRA1005415
SRR013519.3465
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
73
1
-
Gln
TTG
[SRA]
>SRA1005416
SRR013519.6822
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
81
7
-
Asn
GTT
[SRA]
>SRA1005417
SRR013519.8116
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
202
128
-
Met
CAT
[SRA]
>SRA1005418
SRR013519.9269
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
145
72
-
Leu
TAA
[SRA]
>SRA1005421
SRR013520.2473
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
159
248
+
Ser
GGA
[SRA]
>SRA1005438
SRR013521.10222
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
251
176
-
Tyr
GTA
[SRA]
>SRA1005424
SRR013521.1097
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
169
95
-
Val
TAC
[SRA]
>SRA1005423
SRR013521.1097
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
252
172
-
Leu
TAG
[SRA]
>SRA1005425
SRR013521.1557
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
113
188
+
Thr
TGT
[SRA]
>SRA1005427
SRR013521.1709
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
169
95
-
Val
TAC
[SRA]
>SRA1005426
SRR013521.1709
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
252
172
-
Leu
TAG
[SRA]
>SRA1005429
SRR013521.2173
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
169
95
-
Val
TAC
[SRA]
>SRA1005428
SRR013521.2173
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
252
172
-
Leu
TAG
[SRA]
>SRA1005431
SRR013521.3573
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
169
95
-
Val
TAC
[SRA]
>SRA1005430
SRR013521.3573
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
252
172
-
Leu
TAG
[SRA]
>SRA1005433
SRR013521.4214
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
169
95
-
Val
TAC
[SRA]
>SRA1005432
SRR013521.4214
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
252
172
-
Leu
TAG
[SRA]
>SRA1005434
SRR013521.4453
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
145
222
+
Met
CAT
[SRA]
>SRA1005435
SRR013521.6223
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
113
188
+
Thr
TGT
[SRA]
>SRA1005436
SRR013521.6316
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
113
188
+
Thr
TGT
[SRA]
>SRA1005437
SRR013521.8916
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
113
188
+
Thr
TGT
[SRA]
>SRA1005422
SRR013521.973
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
113
188
+
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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