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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
stramenopiles
HIT:
90 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>CHL090103350
Z67753
stramenopiles
Odontella sinensis
267
341
+
Pro
TGG
[ENA]
¡û
>CHL090103351
Z67753
stramenopiles
Odontella sinensis
3761
3834
+
Ile
GAT
[ENA]
¡û
>CHL090103352
Z67753
stramenopiles
Odontella sinensis
3838
3911
+
Ala
TGC
[ENA]
¡û
>CHL090103353
Z67753
stramenopiles
Odontella sinensis
9852
9923
+
Asn
GTT
[ENA]
¡û
>CHL090103354
Z67753
stramenopiles
Odontella sinensis
13780
13850
+
Cys
GCA
[ENA]
¡û
>CHL090103355
Z67753
stramenopiles
Odontella sinensis
13921
14006
+
Leu
TAA
[ENA]
¡û
>CHL090200172
Z67753
stramenopiles
Odontella sinensis
33891
33964
+
Arg
ACG
[ENA]
¡û
>CHL090103356
Z67753
stramenopiles
Odontella sinensis
34018
34091
+
Gln
TTG
[ENA]
¡û
>CHL090103357
Z67753
stramenopiles
Odontella sinensis
35295
35368
+
His
GTG
[ENA]
¡û
>CHL090103376
Z67753
stramenopiles
Odontella sinensis
46564
46483
-
Leu
TAG
[ENA]
¡û
>CHL090103375
Z67753
stramenopiles
Odontella sinensis
50521
50448
-
Ala
TGC
[ENA]
¡û
>CHL090103374
Z67753
stramenopiles
Odontella sinensis
50598
50525
-
Ile
GAT
[ENA]
¡û
>CHL090103373
Z67753
stramenopiles
Odontella sinensis
54092
54018
-
Pro
TGG
[ENA]
¡û
>CHL090103358
Z67753
stramenopiles
Odontella sinensis
62586
62659
+
Met
CAT
[ENA]
¡û
>CHL090103359
Z67753
stramenopiles
Odontella sinensis
63198
63287
+
Ser
TGA
[ENA]
¡û
>CHL090103372
Z67753
stramenopiles
Odontella sinensis
64846
64773
-
Arg
TCT
[ENA]
¡û
>CHL090103371
Z67753
stramenopiles
Odontella sinensis
65166
65093
-
Asp
GTC
[ENA]
¡û
>CHL090103370
Z67753
stramenopiles
Odontella sinensis
65340
65252
-
Ser
GCT
[ENA]
¡û
>CHL090200174
Z67753
stramenopiles
Odontella sinensis
65452
65380
-
Met
CAT
[ENA]
¡û
>CHL090103369
Z67753
stramenopiles
Odontella sinensis
66431
66350
-
Tyr
GTA
[ENA]
¡û
>CHL090103360
Z67753
stramenopiles
Odontella sinensis
66555
66627
+
Val
TAC
[ENA]
¡û
>CHL090103361
Z67753
stramenopiles
Odontella sinensis
66647
66717
+
Thr
TGT
[ENA]
¡û
>CHL090103362
Z67753
stramenopiles
Odontella sinensis
83508
83579
+
Gly
TCC
[ENA]
¡û
>CHL090103368
Z67753
stramenopiles
Odontella sinensis
86067
85994
-
Gly
GCC
[ENA]
¡û
>CHL090103363
Z67753
stramenopiles
Odontella sinensis
86730
86801
+
Lys
TTT
[ENA]
¡û
>CHL090103367
Z67753
stramenopiles
Odontella sinensis
92732
92660
-
Trp
CCA
[ENA]
¡û
>CHL090103366
Z67753
stramenopiles
Odontella sinensis
94256
94184
-
Phe
GAA
[ENA]
¡û
>CHL090103364
Z67753
stramenopiles
Odontella sinensis
95722
95794
+
Arg
CCG
[ENA]
¡û
>CHL090103365
Z67753
stramenopiles
Odontella sinensis
96215
96301
+
Met
CAT
[ENA]
¡û
>CHL090102719
EF067920
stramenopiles
Phaeodactylum tricornutum
9582
9652
+
Gly
TCC
[ENA]
¡û
>CHL090200124
EF067920
stramenopiles
Phaeodactylum tricornutum
12218
12144
-
Glu
TTC
[ENA]
¡û
>CHL090102746
EF067920
stramenopiles
Phaeodactylum tricornutum
12341
12267
-
Gly
GCC
[ENA]
¡û
>CHL090102720
EF067920
stramenopiles
Phaeodactylum tricornutum
13008
13079
+
Lys
TTT
[ENA]
¡û
>CHL090102721
EF067920
stramenopiles
Phaeodactylum tricornutum
16589
16660
+
Thr
TGT
[ENA]
¡û
>CHL090102745
EF067920
stramenopiles
Phaeodactylum tricornutum
16962
16890
-
Arg
TCT
[ENA]
¡û
>CHL090102744
EF067920
stramenopiles
Phaeodactylum tricornutum
17042
16969
-
Val
TAC
[ENA]
¡û
>CHL090102722
EF067920
stramenopiles
Phaeodactylum tricornutum
17190
17273
+
Tyr
GTA
[ENA]
¡û
>CHL090200123
EF067920
stramenopiles
Phaeodactylum tricornutum
17663
17735
+
Met
CAT
[ENA]
¡û
>CHL090102723
EF067920
stramenopiles
Phaeodactylum tricornutum
17793
17881
+
Ser
GCT
[ENA]
¡û
>CHL090102724
EF067920
stramenopiles
Phaeodactylum tricornutum
17966
18041
+
Asp
GTC
[ENA]
¡û
>CHL090102743
EF067920
stramenopiles
Phaeodactylum tricornutum
24248
24161
-
Ser
TGA
[ENA]
¡û
>CHL090102742
EF067920
stramenopiles
Phaeodactylum tricornutum
24860
24785
-
Met
CAT
[ENA]
¡û
>CHL090102741
EF067920
stramenopiles
Phaeodactylum tricornutum
26877
26805
-
Trp
CCA
[ENA]
¡û
>CHL090102740
EF067920
stramenopiles
Phaeodactylum tricornutum
28404
28332
-
Phe
GAA
[ENA]
¡û
>CHL090102725
EF067920
stramenopiles
Phaeodactylum tricornutum
30013
30085
+
Arg
CCG
[ENA]
¡û
>CHL090102726
EF067920
stramenopiles
Phaeodactylum tricornutum
30471
30557
+
Met
CAT
[ENA]
¡û
>CHL090102727
EF067920
stramenopiles
Phaeodactylum tricornutum
63784
63859
+
Pro
TGG
[ENA]
¡û
>CHL090102728
EF067920
stramenopiles
Phaeodactylum tricornutum
66823
66896
+
Ile
GAT
[ENA]
¡û
>CHL090102729
EF067920
stramenopiles
Phaeodactylum tricornutum
66899
66972
+
Ala
TGC
[ENA]
¡û
>CHL090102730
EF067920
stramenopiles
Phaeodactylum tricornutum
70850
70931
+
Leu
TAG
[ENA]
¡û
>CHL090102739
EF067920
stramenopiles
Phaeodactylum tricornutum
81251
81178
-
His
GTG
[ENA]
¡û
>CHL090102738
EF067920
stramenopiles
Phaeodactylum tricornutum
84249
84176
-
Gln
TTG
[ENA]
¡û
>CHL090102737
EF067920
stramenopiles
Phaeodactylum tricornutum
84353
84278
-
Arg
ACG
[ENA]
¡û
>CHL090102736
EF067920
stramenopiles
Phaeodactylum tricornutum
104560
104475
-
Leu
TAA
[ENA]
¡û
>CHL090102735
EF067920
stramenopiles
Phaeodactylum tricornutum
104713
104643
-
Cys
GCA
[ENA]
¡û
>CHL090102731
EF067920
stramenopiles
Phaeodactylum tricornutum
109213
109284
+
Asn
GTT
[ENA]
¡û
>CHL090102734
EF067920
stramenopiles
Phaeodactylum tricornutum
114145
114072
-
Ala
TGC
[ENA]
¡û
>CHL090102733
EF067920
stramenopiles
Phaeodactylum tricornutum
114221
114148
-
Ile
GAT
[ENA]
¡û
>CHL090102732
EF067920
stramenopiles
Phaeodactylum tricornutum
117260
117185
-
Pro
TGG
[ENA]
¡û
>CHL090102774
EF067921
stramenopiles
Thalassiosira pseudonana
6075
5991
-
Met
CAT
[ENA]
¡û
>CHL090102773
EF067921
stramenopiles
Thalassiosira pseudonana
6547
6475
-
Arg
CCG
[ENA]
¡û
>CHL090102747
EF067921
stramenopiles
Thalassiosira pseudonana
19666
19739
+
Val
TAC
[ENA]
¡û
>CHL090102748
EF067921
stramenopiles
Thalassiosira pseudonana
19751
19824
+
Arg
TCT
[ENA]
¡û
>CHL090102749
EF067921
stramenopiles
Thalassiosira pseudonana
23395
23467
+
Phe
GAA
[ENA]
¡û
>CHL090102750
EF067921
stramenopiles
Thalassiosira pseudonana
24922
24995
+
Trp
CCA
[ENA]
¡û
>CHL090102751
EF067921
stramenopiles
Thalassiosira pseudonana
49110
49183
+
Thr
TGT
[ENA]
¡û
>CHL090200125
EF067921
stramenopiles
Thalassiosira pseudonana
49637
49709
+
Met
CAT
[ENA]
¡û
>CHL090102752
EF067921
stramenopiles
Thalassiosira pseudonana
49735
49823
+
Ser
GCT
[ENA]
¡û
>CHL090102753
EF067921
stramenopiles
Thalassiosira pseudonana
49895
49970
+
Asp
GTC
[ENA]
¡û
>CHL090102754
EF067921
stramenopiles
Thalassiosira pseudonana
50570
50653
+
Tyr
GTA
[ENA]
¡û
>CHL090102772
EF067921
stramenopiles
Thalassiosira pseudonana
54502
54431
-
Lys
TTT
[ENA]
¡û
>CHL090102755
EF067921
stramenopiles
Thalassiosira pseudonana
55236
55308
+
Gly
GCC
[ENA]
¡û
>CHL090200126
EF067921
stramenopiles
Thalassiosira pseudonana
55335
55408
+
Glu
TTC
[ENA]
¡û
>CHL090102756
EF067921
stramenopiles
Thalassiosira pseudonana
55849
55924
+
Met
CAT
[ENA]
¡û
>CHL090102757
EF067921
stramenopiles
Thalassiosira pseudonana
56462
56549
+
Ser
TGA
[ENA]
¡û
>CHL090102771
EF067921
stramenopiles
Thalassiosira pseudonana
60344
60274
-
Gly
TCC
[ENA]
¡û
>CHL090102770
EF067921
stramenopiles
Thalassiosira pseudonana
65404
65330
-
Pro
TGG
[ENA]
¡û
>CHL090102758
EF067921
stramenopiles
Thalassiosira pseudonana
68552
68625
+
Ile
GAT
[ENA]
¡û
>CHL090102759
EF067921
stramenopiles
Thalassiosira pseudonana
68628
68700
+
Ala
TGC
[ENA]
¡û
>CHL090102760
EF067921
stramenopiles
Thalassiosira pseudonana
72623
72704
+
Leu
TAG
[ENA]
¡û
>CHL090102769
EF067921
stramenopiles
Thalassiosira pseudonana
84653
84580
-
His
GTG
[ENA]
¡û
>CHL090102768
EF067921
stramenopiles
Thalassiosira pseudonana
85549
85476
-
Gln
TTG
[ENA]
¡û
>CHL090200127
EF067921
stramenopiles
Thalassiosira pseudonana
85682
85607
-
Arg
ACG
[ENA]
¡û
>CHL090102767
EF067921
stramenopiles
Thalassiosira pseudonana
105831
105745
-
Leu
TAA
[ENA]
¡û
>CHL090102766
EF067921
stramenopiles
Thalassiosira pseudonana
105977
105907
-
Cys
GCA
[ENA]
¡û
>CHL090102765
EF067921
stramenopiles
Thalassiosira pseudonana
110046
109973
-
Asn
GTT
[ENA]
¡û
>CHL090102764
EF067921
stramenopiles
Thalassiosira pseudonana
121443
121362
-
Leu
TAG
[ENA]
¡û
>CHL090102763
EF067921
stramenopiles
Thalassiosira pseudonana
125437
125365
-
Ala
TGC
[ENA]
¡û
>CHL090102762
EF067921
stramenopiles
Thalassiosira pseudonana
125513
125440
-
Ile
GAT
[ENA]
¡û
>CHL090102761
EF067921
stramenopiles
Thalassiosira pseudonana
128661
128735
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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