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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
unclassified bacterial viruses
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>PHG0100171
AM051322
unclassified bacterial viruses
Enterobacteria phage Nil3 SK137 (AM051322)
5640
5715
+
Met
CAT
[ENA]
¡û
>PHG0100172
AM051322
unclassified bacterial viruses
Enterobacteria phage Nil3 SK137 (AM051322)
5723
5799
+
Arg
TCG
[ENA]
¡û
>PHG0100173
AM051322
unclassified bacterial viruses
Enterobacteria phage Nil3 SK137 (AM051322)
5813
5889
+
Arg
TCT
[ENA]
¡û
>PHG0100071
AF548457
unclassified bacterial viruses
Enterobacteria phage SC370 SD86015 (AF548457)
949
1024
+
Met
CAT
[ENA]
¡û
>PHG0100072
AF548457
unclassified bacterial viruses
Enterobacteria phage SC370 SD86015 (AF548457)
1034
1110
+
Arg
TCG
[ENA]
¡û
>PHG0100073
AF548457
unclassified bacterial viruses
Enterobacteria phage SC370 SD86015 (AF548457)
1124
1200
+
Arg
TCT
[ENA]
¡û
>PHG14103147
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
3220
3294
+
Met
CAT
[ENA]
¡û
>PHG14103148
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
3536
3611
+
Trp
CCA
[ENA]
¡û
>PHG14103149
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
3621
3696
+
Asn
GTT
[ENA]
¡û
>PHG14103150
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
4525
4600
+
Gln
TTG
[ENA]
¡û
>PHG14103151
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
4750
4831
+
Tyr
GTA
[ENA]
¡û
>PHG14103154
KM389388
unclassified bacterial viruses
Escherichia phage CEV1 (KM389388)
11715
11641
-
Met
CAT
[ENA]
¡û
>PHG14101495
JQ347801
unclassified bacterial viruses
Escherichia phage JLK-2012 DEC5E (JQ347801)
23402
23476
+
Asn
GTT
[ENA]
¡û
>PHG14101496
JQ347801
unclassified bacterial viruses
Escherichia phage JLK-2012 DEC5E (JQ347801)
23561
23635
+
Gly
TCC
[ENA]
¡û
>PHG0100606
FJ147496
unclassified bacterial viruses
Listeria phage 20422-1 N4 (FJ147496)
898
825
-
Met
CAT
[ENA]
¡û
>PHG0100607
FJ147504
unclassified bacterial viruses
Listeria phage 805405-1 N4 (FJ147504)
898
825
-
Met
CAT
[ENA]
¡û
>PHG14101615
JX042578
unclassified bacterial viruses
Mycobacteriophage ElTiger69 Lu11 (JX042578)
4135
4208
+
Trp
CCA
[ENA]
¡û
>PHG14102898
KJ534580
unclassified bacterial viruses
Nitrincola phage 1M3-16 GT7 (KJ534580)
4569
4645
+
Met
CAT
[ENA]
¡û
>PHG14102663
KF879861
unclassified bacterial viruses
Nocardia phage NOC1 phiIBB-PAA2 (KF879861)
11630
11703
+
Asn
GTT
[ENA]
¡û
>PHG14100306
GU071105
unclassified bacterial viruses
Prochlorococcus phage Syn1 (GU071105)
20480
20561
+
Leu
TAG
[ENA]
¡û
>PHG14100307
GU071105
unclassified bacterial viruses
Prochlorococcus phage Syn1 (GU071105)
163204
163276
+
Arg
TCT
[ENA]
¡û
>PHG14100308
GU071105
unclassified bacterial viruses
Prochlorococcus phage Syn1 (GU071105)
163279
163350
+
Thr
TGT
[ENA]
¡û
>PHG14100309
GU071105
unclassified bacterial viruses
Prochlorococcus phage Syn1 (GU071105)
163498
163573
+
Asn
GTT
[ENA]
¡û
>PHG14100310
GU071105
unclassified bacterial viruses
Prochlorococcus phage Syn1 (GU071105)
163574
163645
+
Val
TAC
[ENA]
¡û
>PHG14100311
GU071105
unclassified bacterial viruses
Prochlorococcus phage Syn1 (GU071105)
167811
167883
+
Gly
TCC
[ENA]
¡û
>PHG14103144
KM389210
unclassified bacterial viruses
Pseudomonas phage DO4 (KM389210)
24673
24598
-
Thr
TGT
[ENA]
¡û
>PHG14103152
KM389324
unclassified bacterial viruses
Pseudomonas phage F_ET2439sp/ET602 (KM389324)
2535
2610
+
Thr
TGT
[ENA]
¡û
>PHG14103145
KM389212
unclassified bacterial viruses
Pseudomonas phage JBD88b (KM389212)
24458
24533
+
Thr
TGT
[ENA]
¡û
>PHG14103156
KM389463
unclassified bacterial viruses
Pseudomonas phage JBD94b (KM389463)
25668
25593
-
Thr
TGT
[ENA]
¡û
>PHG14101941
JX483881
unclassified bacterial viruses
Rhizobium phage RHEph10 S-CAM20 (JX483881)
60708
60782
+
Cys
GCA
[ENA]
¡û
>PHG14101828
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
9578
9654
+
Pro
TGG
[ENA]
¡û
>PHG14101829
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
9662
9739
+
Glu
TTC
[ENA]
¡û
>PHG14200126
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
10274
10350
+
Met
CAT
[ENA]
¡û
>PHG14101830
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
10353
10427
+
Ile
GAT
[ENA]
¡û
>PHG14101831
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
11598
11673
+
Ala
TGC
[ENA]
¡û
>PHG14101832
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
11680
11754
+
Gly
TCC
[ENA]
¡û
>PHG14101833
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
11761
11837
+
Thr
TGT
[ENA]
¡û
>PHG14101834
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
11933
12007
+
Val
TAC
[ENA]
¡û
>PHG14101835
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
12009
12086
+
Leu
CAA
[ENA]
¡û
>PHG14101836
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
12671
12746
+
Gln
TTG
[ENA]
¡û
>PHG14101837
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
12749
12827
+
Leu
TAA
[ENA]
¡û
>PHG14101838
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
12833
12908
+
Gln
CTG
[ENA]
¡û
>PHG14101839
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
12940
13015
+
His
GTG
[ENA]
¡û
>PHG14101840
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
13947
14022
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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