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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100103 (58 seq.)
>W1710867313
LMIE01000001
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
1681
1596
-
Tyr
GTA
[ENA]
¡û
>W1710870500
LMKO01000006
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
76863
76948
+
Tyr
GTA
[ENA]
¡û
>W1711167250
LVWD01000042
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
466
381
-
Tyr
GTA
[ENA]
¡û
>W1711259924
LYVQ01000206
Betaproteobacteria
Pelomonas sp. KK5 [LYVQ]
544
459
-
Tyr
GTA
[ENA]
¡û
>W1711394831
MERS01000021
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
510
425
-
Tyr
GTA
[ENA]
¡û
>W1711394868
MERT01000026
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
513
428
-
Tyr
GTA
[ENA]
¡û
>W1712049985
NFUU01000003
Betaproteobacteria
Hydrogenophaga sp. IBVHS1 [NFUU]
922
837
-
Tyr
GTA
[ENA]
¡û
>W1712102905
NIOE01000007
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
517289
517374
+
Tyr
GTA
[ENA]
¡û
>W1712102989
NIOF01000029
Betaproteobacteria
Roseateles aquatilis [NIOF]
17544
17629
+
Tyr
GTA
[ENA]
¡û
>C171049783
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
3937680
3937595
-
Tyr
GTA
-
¡û
>C171063202
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
4641559
4641474
-
Tyr
GTA
-
¡û
>WENV180016810
FSVW01002886
[FSVW] metagenome; soil
239
154
-
Tyr
GTA
[ENA]
¢þ
>WENV180019389
FTBV01000851
[FTBV] metagenome; soil
53584
53669
+
Tyr
GTA
[ENA]
¢þ
>WENV180024133
FTIF01063497
[FTIF] metagenome; soil
1111
1196
+
Tyr
GTA
[ENA]
¢þ
>WENV180024156
FTIF01097216
[FTIF] metagenome; soil
166
251
+
Tyr
GTA
[ENA]
¢þ
>WENV180024172
FTIF01126422
[FTIF] metagenome; soil
234
149
-
Tyr
GTA
[ENA]
¢þ
>WENV180025425
FTIP01003479
[FTIP] metagenome; soil
127
42
-
Tyr
GTA
[ENA]
¢þ
>WENV180025671
FTIP01297012
[FTIP] metagenome; soil
207
122
-
Tyr
GTA
[ENA]
¢þ
>WENV180025974
FTIR01001172
[FTIR] metagenome; soil
10822
10907
+
Tyr
GTA
[ENA]
¢þ
>WENV180026186
FTIR01287815
[FTIR] metagenome; soil
617
532
-
Tyr
GTA
[ENA]
¢þ
>WENV180030569
FTJN01000253
[FTJN] metagenome; soil
109398
109483
+
Tyr
GTA
[ENA]
¢þ
>WENV180030738
FTJN01008157
[FTJN] metagenome; soil
853
768
-
Tyr
GTA
[ENA]
¢þ
>WENV180032731
FTKD01000219
[FTKD] metagenome; soil
656
571
-
Tyr
GTA
[ENA]
¢þ
>WENV180034054
FTKM01304814
[FTKM] metagenome; soil
506
421
-
Tyr
GTA
[ENA]
¢þ
>WENV180035140
FTKT01002765
[FTKT] metagenome; soil
5674
5759
+
Tyr
GTA
[ENA]
¢þ
>WENV180035298
FTKT01106981
[FTKT] metagenome; soil
2191
2276
+
Tyr
GTA
[ENA]
¢þ
>WENV181380374
OFRD01068964
[OFRD] wastewater metagenome; Exp Tend CN 100WW
190
105
-
Tyr
GTA
[ENA]
¢þ
>WENV181400500
OFSF01008567
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1045
960
-
Tyr
GTA
[ENA]
¢þ
>W141214307
AZSO01001424
Betaproteobacteria
Hydrogenophaga sp. T4 [AZSO]
418
333
-
Tyr
GTA
[ENA]
¡û
>WENV183697290
OUNJ010277733
[OUNJ] metagenome; soil
38
123
+
Tyr
GTA
[ENA]
¢þ
>WENV183697298
OUNJ010302668
[OUNJ] metagenome; soil
144
59
-
Tyr
GTA
[ENA]
¢þ
>WENV183745251
PJUL01009557
[PJUL] feces metagenome; Chicken feces enriched on filter paper
66
151
+
Tyr
GTA
[ENA]
¢þ
>WENV170018774
BBPD01000840
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
25239
25324
+
Tyr
GTA
[ENA]
¢þ
>WENV170019955
BBPE01001790
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
476
391
-
Tyr
GTA
[ENA]
¢þ
>WENV170554239
CXWK01055469
[CXWK] wastewater metagenome; activated sludge
1810
1895
+
Tyr
GTA
[ENA]
¢þ
>WENV170711870
LNFM01007966
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
512
427
-
Tyr
GTA
[ENA]
¢þ
>C191163893
CP039252
Betaproteobacteria
Hydrogenophaga sp. PAMC20947 [CP039252]
3424606
3424521
-
Tyr
GTA
-
¡û
>C191182027
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
635064
635149
+
Tyr
GTA
-
¡û
>W1910699327
MERF01000250
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_61_14 [MERF]
4111
4196
+
Tyr
GTA
[ENA]
¡û
>W1910699734
MERU01000013
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
1127
1042
-
Tyr
GTA
[ENA]
¡û
>W1910699844
MERX01000596
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_66_10 [MERX]
608
523
-
Tyr
GTA
[ENA]
¡û
>W1911647489
QAJN01000013
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
518
433
-
Tyr
GTA
[ENA]
¡û
>W1810081335
PEOG01000010
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
95012
94927
-
Tyr
GTA
[ENA]
¡û
>W1810222838
POSP01000003
Betaproteobacteria
Paucibacter aquatile CR182 [POSP]
3783048
3783133
+
Tyr
GTA
[ENA]
¡û
>W1810672039
QJTC01000038
Betaproteobacteria
Xylophilus ampelinus CECT 7646 [QJTC]
504
419
-
Tyr
GTA
[ENA]
¡û
>W11187687
CAFG01000382
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
467
382
-
Tyr
GTA
[ENA]
¡û
>C161036450
CP011514
Betaproteobacteria
Mitsuaria sp. 7 [CP011514]
4629780
4629695
-
Tyr
GTA
-
¡û
>W121127048
CAFG01000382
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
467
382
-
Tyr
GTA
[ENA]
¡û
>W1610070576
BCTJ01000017
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
103650
103735
+
Tyr
GTA
[ENA]
¡û
>W1610074450
BCWR01000019
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
214513
214598
+
Tyr
GTA
[ENA]
¡û
>W1610076252
BCYP01000024
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199232
199317
+
Tyr
GTA
[ENA]
¡û
>W1610729659
LMIE01000001
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
1681
1596
-
Tyr
GTA
[ENA]
¡û
>W1610732846
LMKO01000006
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
76863
76948
+
Tyr
GTA
[ENA]
¡û
>W1610977581
LVWD01000042
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
466
381
-
Tyr
GTA
[ENA]
¡û
>W1710067949
BCTJ01000017
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
103650
103735
+
Tyr
GTA
[ENA]
¡û
>W1710071568
BCWR01000019
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
214513
214598
+
Tyr
GTA
[ENA]
¡û
>W1710074067
BCYP01000024
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199232
199317
+
Tyr
GTA
[ENA]
¡û
>W1710575451
FOZE01000002
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
999302
999217
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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