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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100107 (31 seq.)
>W1711167096
LVWA01000010
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
166488
166571
+
Tyr
GTA
[ENA]
¡û
>WENV183712306
PDWI01095038
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1734
1651
-
Tyr
GTA
[ENA]
¢þ
>WENV170219262
CEPZ01052785
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
84
1
-
Tyr
GTA
[ENA]
¢þ
>WENV170298064
CESF01042618
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
200
117
-
Tyr
GTA
[ENA]
¢þ
>WENV170301073
CESH01002216
[CESH] marine metagenome genome assembly TARA_094_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
20932
20849
-
Tyr
GTA
[ENA]
¢þ
>WENV170420555
CEUN01008553
[CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
203
120
-
Tyr
GTA
[ENA]
¢þ
>WENV170937678
MDTG01295941
[MDTG] marine metagenome; seawater
24109
24026
-
Tyr
GTA
[ENA]
¢þ
>C181219835
LT634361
Bacteroidota
Tenacibaculum maritimum NCIMB 2154 [LT634361]
1001611
1001694
+
Tyr
GTA
-
¡û
>C181219857
LT634361
Bacteroidota
Tenacibaculum maritimum NCIMB 2154 [LT634361]
2493304
2493221
-
Tyr
GTA
-
¡û
>C191018697
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
4471368
4471451
+
Tyr
GTA
-
¡û
>W1910785804
MQVY01000004
Bacteroidota
Tenacibaculum sp. SG-28 [MQVY]
121474
121557
+
Tyr
GTA
[ENA]
¡û
>W1911749370
QWGE01000004
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
178408
178491
+
Tyr
GTA
[ENA]
¡û
>W1810682079
QKTV01000002
Bacteroidota
Winogradskyella aurantiaca IMCC20180 [QKTV]
300735
300652
-
Tyr
GTA
[ENA]
¡û
>W1810724885
QOCC01000020
Bacteroidota
Tenacibaculum sp. E3R01 [QOCC]
27102
27185
+
Tyr
GTA
[ENA]
¡û
>W1810724890
QOCC01000020
Bacteroidota
Tenacibaculum sp. E3R01 [QOCC]
210095
210178
+
Tyr
GTA
[ENA]
¡û
>W1810724892
QOCC01000020
Bacteroidota
Tenacibaculum sp. E3R01 [QOCC]
210524
210607
+
Tyr
GTA
[ENA]
¡û
>W1511590326
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2178256
2178341
+
Tyr
GTA
[ENA]
¡û
>W1511590328
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2178496
2178581
+
Tyr
GTA
[ENA]
¡û
>W1511590331
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2178824
2178909
+
Tyr
GTA
[ENA]
¡û
>W1511590334
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2179156
2179241
+
Tyr
GTA
[ENA]
¡û
>W1511590339
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2179711
2179796
+
Tyr
GTA
[ENA]
¡û
>W1511638670
LDOD01000010
Bacteroidota
Tenacibaculum mesophilum HMG1 [LDOD]
53632
53717
+
Tyr
GTA
[ENA]
¡û
>W1511638675
LDOD01000010
Bacteroidota
Tenacibaculum mesophilum HMG1 [LDOD]
100981
101066
+
Tyr
GTA
[ENA]
¡û
>C161046306
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3290261
3290346
+
Tyr
GTA
-
¡û
>C161046319
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3291721
3291806
+
Tyr
GTA
-
¡û
>C161076980
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
2494028
2494111
+
Tyr
GTA
-
¡û
>W1710537826
FNUB01000004
Bacteroidota
Tenacibaculum sp. MAR_2010_89 [FNUB]
407866
407783
-
Tyr
GTA
[ENA]
¡û
>W1710537831
FNUB01000004
Bacteroidota
Tenacibaculum sp. MAR_2010_89 [FNUB]
188520
188435
-
Tyr
GTA
[ENA]
¡û
>W1710537833
FNUB01000004
Bacteroidota
Tenacibaculum sp. MAR_2010_89 [FNUB]
188091
188006
-
Tyr
GTA
[ENA]
¡û
>W1710584788
FQVV01000006
Bacteroidota
Tenacibaculum mesophilum [FQVV]
75900
75815
-
Tyr
GTA
[ENA]
¡û
>W1710584793
FQVV01000006
Bacteroidota
Tenacibaculum mesophilum [FQVV]
28589
28504
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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