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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100118 (25 seq.)
>W131164194
ARAI01000039
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
86
170
+
Leu
TAG
[ENA]
¡û
>WENV180210077
OBAL01089727
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
339
257
-
Leu
TAG
[ENA]
¢þ
>WENV180376726
OBOM01063098
[OBOM] marine metagenome; Seawater
39
121
+
Leu
TAG
[ENA]
¢þ
>WENV180394406
OBPS01004106
[OBPS] marine metagenome; ENVO:00002010 seawater
1430
1512
+
Leu
TAG
[ENA]
¢þ
>WENV183707245
PDWI01007581
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
793
875
+
Leu
TAG
[ENA]
¢þ
>C181063469
CP022378
Bacteroidota
Capnocytophaga cynodegmi G7591 [CP022378]
1236805
1236887
+
Leu
TAG
-
¡û
>C181063556
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
918471
918553
+
Leu
TAG
-
¡û
>C181063603
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
894487
894569
+
Leu
TAG
-
¡û
>C181063658
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
1774348
1774430
+
Leu
TAG
-
¡û
>C181063902
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
1525692
1525610
-
Leu
TAG
-
¡û
>C181063931
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
1806564
1806646
+
Leu
TAG
-
¡û
>C181063974
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
1787050
1787132
+
Leu
TAG
-
¡û
>C191093549
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
2129731
2129813
+
Leu
TAG
-
¡û
>C191213474
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
1826280
1826362
+
Leu
TAG
-
¡û
>W1911239256
NSDI01000008
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
57269
57187
-
Leu
TAG
[ENA]
¡û
>W1510076196
CDOE01000072
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
31608
31524
-
Leu
TAG
[ENA]
¡û
>W1510076210
CDOF01000001
Bacteroidota
Capnocytophaga cynodegmi Ccyn_ATCC49044 [CDOF]
91522
91606
+
Leu
TAG
[ENA]
¡û
>W1510076287
CDOG01000078
Bacteroidota
Capnocytophaga cynodegmi Ccy74 [CDOG]
91564
91648
+
Leu
TAG
[ENA]
¡û
>W1510076307
CDOH01000109
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
27406
27322
-
Leu
TAG
[ENA]
¡û
>W1510076342
CDOI01000090
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
28354
28270
-
Leu
TAG
[ENA]
¡û
>W1510076390
CDOJ01000091
Bacteroidota
Capnocytophaga canimorsus Cc2 [CDOJ]
15743
15659
-
Leu
TAG
[ENA]
¡û
>W1510076426
CDOK01000162
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
28202
28118
-
Leu
TAG
[ENA]
¡û
>W1510076463
CDOL01000220
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
37358
37442
+
Leu
TAG
[ENA]
¡û
>C11104965
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
195995
196079
+
Leu
TAG
[Ensembl]
¡û
>WENV050931
AACY022916028
Marine microbial communities from Global Ocean Sampling (GOS)
273
187
-
Leu
TAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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