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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100122 (66 seq.)
>W1710860216
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
532914
532997
+
Leu
GAG
[ENA]
¡û
>W1710863965
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
594936
595019
+
Leu
GAG
[ENA]
¡û
>W1710864529
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
2385828
2385745
-
Leu
GAG
[ENA]
¡û
>W1710868854
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
705713
705630
-
Leu
GAG
[ENA]
¡û
>W1710875109
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
882604
882521
-
Leu
GAG
[ENA]
¡û
>W1710875913
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
562854
562937
+
Leu
GAG
[ENA]
¡û
>W1710876029
LMOW01000002
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
390085
390002
-
Leu
GAG
[ENA]
¡û
>W131036141
AKVP01000018
Actinomycetota
Microbacterium barkeri 2011-R4 [AKVP]
9255
9172
-
Leu
GAG
[ENA]
¡û
>W131098953
AOSO01000004
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
539032
539115
+
Leu
GAG
[ENA]
¡û
>W1711074806
LSJW01000095
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
64739
64822
+
Leu
GAG
[ENA]
¡û
>W1711173339
LWCU01000012
Actinomycetota
Microbacterium sp. H83 [LWCU]
73001
72916
-
Leu
GAG
[ENA]
¡û
>W131226588
AUEM01000002
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
523944
524027
+
Leu
GAG
[ENA]
¡û
>C171073936
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
1757999
1757916
-
Leu
GAG
-
¡û
>W141075442
ATAO01000206
Actinomycetota
Microbacterium liquefaciens MF109 [ATAO]
209309
209226
-
Leu
GAG
[ENA]
¡û
>W141289407
JARC01000025
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
321724
321641
-
Leu
GAG
[ENA]
¡û
>W141289440
JARD01000012
Actinomycetota
Microbacterium sp. Cr-K32 [JARD]
163779
163862
+
Leu
GAG
[ENA]
¡û
>W141289496
JARE01000047
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
298528
298445
-
Leu
GAG
[ENA]
¡û
>W141289548
JARF01000036
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
181268
181351
+
Leu
GAG
[ENA]
¡û
>WENV183735278
PJUA01007135
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
578
495
-
Leu
GAG
[ENA]
¢þ
>C181004080
AP017975
Actinomycetota
Microbacterium sp. TPU 3598 [AP017975]
1883891
1883974
+
Leu
GAG
-
¡û
>C181200449
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
1751188
1751105
-
Leu
GAG
-
¡û
>C191026889
CP024170
Actinomycetota
Microbacterium sp. Y-01 [CP024170]
1825713
1825630
-
Leu
GAG
-
¡û
>C191074604
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
1943207
1943290
+
Leu
GAG
-
¡û
>C191074847
CP031422
Actinomycetota
Microbacterium oxydans HG3 [CP031422]
1965258
1965341
+
Leu
GAG
-
¡û
>W141532268
JHET01000007
Actinomycetota
Microbacterium sp. CH12i [JHET]
294006
294091
+
Leu
GAG
[ENA]
¡û
>C191185989
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
1725965
1725882
-
Leu
GAG
-
¡û
>W1910183338
BJNQ01000003
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
210517
210434
-
Leu
GAG
[ENA]
¡û
>W1910184031
BJOG01000004
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
579799
579882
+
Leu
GAG
[ENA]
¡û
>W1910212000
FMIR01000019
Actinomycetota
Microbacterium oxydans [FMIR]
142426
142343
-
Leu
GAG
[ENA]
¡û
>W1910636839
LPVV01000040
Actinomycetota
Microbacterium sp. SZ1 [LPVV]
260915
260832
-
Leu
GAG
[ENA]
¡û
>W1911566361
PCOT01000016
Actinomycetota
Microbacterium sp. MYb72 [PCOT]
73245
73162
-
Leu
GAG
[ENA]
¡û
>W1911566440
PCOV01000001
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
664939
664856
-
Leu
GAG
[ENA]
¡û
>W1911566583
PCOY01000001
Actinomycetota
Microbacterium sp. MYb62 [PCOY]
39064
39147
+
Leu
GAG
[ENA]
¡û
>W1911566691
PCPA01000001
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
366505
366422
-
Leu
GAG
[ENA]
¡û
>W1911566839
PCPD01000004
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
111692
111609
-
Leu
GAG
[ENA]
¡û
>W1911566997
PCPG01000001
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
691004
690921
-
Leu
GAG
[ENA]
¡û
>W1911567095
PCPI01000001
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
172225
172308
+
Leu
GAG
[ENA]
¡û
>W1911567142
PCPJ01000001
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
502745
502828
+
Leu
GAG
[ENA]
¡û
>W1911567229
PCPL01000001
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
172230
172313
+
Leu
GAG
[ENA]
¡û
>W1911567502
PCPQ01000001
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
172222
172305
+
Leu
GAG
[ENA]
¡û
>W1810538490
QDFV01000003
Actinomycetota
Microbacterium sp. TPD7012 [QDFV]
239775
239858
+
Leu
GAG
[ENA]
¡û
>W1810724695
QOAY01000306
Actinomycetota
Microbacterium sp. H6 [QOAY]
171029
170946
-
Leu
GAG
[ENA]
¡û
>C151093272
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
785062
784979
-
Leu
GAG
-
¡û
>W1510085894
CDWI01000011
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
971498
971415
-
Leu
GAG
[ENA]
¡û
>W1511313257
JPSY01000003
Actinomycetota
Microbacterium profundi Shh49 [JPSY]
29492
29409
-
Leu
GAG
[ENA]
¡û
>W1511348015
JRKC01000005
Actinomycetota
Microbacterium sp. ZOR0019 [JRKC]
159974
160057
+
Leu
GAG
[ENA]
¡û
>W1511509253
JXQX01000002
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
87865
87948
+
Leu
GAG
[ENA]
¡û
>W1511510211
JXRU01000021
Actinomycetota
Microbacterium sp. SA39 [JXRU]
34016
33933
-
Leu
GAG
[ENA]
¡û
>W1511528727
JYIU01000046
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
168655
168738
+
Leu
GAG
[ENA]
¡û
>W1511528776
JYIV01000030
Actinomycetota
Microbacterium oxydans BEL163 [JYIV]
427822
427739
-
Leu
GAG
[ENA]
¡û
>W1511528809
JYIW01000026
Actinomycetota
Microbacterium oxydans BEL4b [JYIW]
522411
522494
+
Leu
GAG
[ENA]
¡û
>W1511588857
LBCR01000024
Actinomycetota
Microbacterium sp. Ag1 [LBCR]
22666
22749
+
Leu
GAG
[ENA]
¡û
>W1610068281
BCRF01000001
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
263898
263815
-
Leu
GAG
[ENA]
¡û
>W1610590713
LDRQ01000010
Actinomycetota
Microbacterium oxydans [LDRQ]
72268
72185
-
Leu
GAG
[ENA]
¡û
>W1610722562
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
532914
532997
+
Leu
GAG
[ENA]
¡û
>W1610726311
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
594936
595019
+
Leu
GAG
[ENA]
¡û
>W1610726875
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
2385828
2385745
-
Leu
GAG
[ENA]
¡û
>W1610731200
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
705713
705630
-
Leu
GAG
[ENA]
¡û
>W1610737455
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
882604
882521
-
Leu
GAG
[ENA]
¡û
>W1610738259
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
562854
562937
+
Leu
GAG
[ENA]
¡û
>W1610738375
LMOW01000002
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
390085
390002
-
Leu
GAG
[ENA]
¡û
>W1610914111
LSJW01000095
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
64739
64822
+
Leu
GAG
[ENA]
¡û
>W1610981944
LWCU01000012
Actinomycetota
Microbacterium sp. H83 [LWCU]
73001
72916
-
Leu
GAG
[ENA]
¡û
>W1710065654
BCRF01000001
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
263898
263815
-
Leu
GAG
[ENA]
¡û
>W1710535580
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
2064527
2064610
+
Leu
GAG
[ENA]
¡û
>W1710709993
LDRQ01000010
Actinomycetota
Microbacterium oxydans [LDRQ]
72268
72185
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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