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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100298 (49 seq.)
>A171000252
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
198740
198653
-
Leu
TAG
-
¡û
>A171003408
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
167157
167070
-
Leu
TAG
-
¡û
>A171005929
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
512686
512599
-
Leu
TAG
-
¡û
>A171006021
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1645649
1645736
+
Leu
TAG
-
¡û
>WENV180039946
LLBY010239527
[LLBY] soil metagenome; soil from tomato rhizosphere
130
216
+
Leu
TAG
[ENA]
¡û
>WENV180041282
LLBZ010085033
[LLBZ] soil metagenome; soil from tomato rhizosphere
3303
3389
+
Leu
TAG
[ENA]
¡û
>WENV180248614
OBEQ010126494
[OBEQ] groundwater metagenome; groundwater
3226
3140
-
Leu
TAG
[ENA]
¡û
>WENV180354698
OBNE01005458
[OBNE] groundwater metagenome; groundwater
263
349
+
Leu
TAG
[ENA]
¡û
>WENV180356501
OBNK01039722
[OBNK] sediment metagenome; sediment
75
161
+
Leu
TAG
[ENA]
¡û
>WENV181329483
OFLX01005984
[OFLX] seawater metagenome; seawater
233
146
-
Leu
TAG
[ENA]
¡û
>WENV183672062
ORJL011132955
[ORJL] groundwater metagenome; groundwater
9483
9569
+
Leu
TAG
[ENA]
¡û
>WENV183679872
ORMF010115304
[ORMF] groundwater metagenome; groundwater
10172
10087
-
Leu
TAG
[ENA]
¡û
>WENV183681011
ORMF010250911
[ORMF] groundwater metagenome; groundwater
595
510
-
Leu
TAG
[ENA]
¡û
>WENV170144462
CENY01153202
[CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
770
857
+
Leu
TAG
[ENA]
¡û
>WENV170480026
CEVL01057388
[CEVL] marine metagenome genome assembly TARA_146_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
234
147
-
Leu
TAG
[ENA]
¡û
>WENV170490920
CEVQ01025928
[CEVQ] marine metagenome genome assembly TARA_148b_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
452
539
+
Leu
TAG
[ENA]
¡û
>WENV170504768
CEVW01002210
[CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3369
3456
+
Leu
TAG
[ENA]
¡û
>WENV170557811
CXWL01038644
[CXWL] groundwater metagenome; biofilm material
1441
1527
+
Leu
TAG
[ENA]
¡û
>WENV170558331
CXWL01063921
[CXWL] groundwater metagenome; biofilm material
1441
1527
+
Leu
TAG
[ENA]
¡û
>WENV170566930
FLLY01014785
[FLLY] seawater metagenome; seawater
138
51
-
Leu
TAG
[ENA]
¡û
>WENV170599192
FUWD010066381
[FUWD] metagenome; unknown
104
17
-
Leu
TAG
[ENA]
¡û
>WENV170619777
FUWD013021028
[FUWD] metagenome; unknown
376
289
-
Leu
TAG
[ENA]
¡û
>WENV170627896
FUWD013239287
[FUWD] metagenome; unknown
376
289
-
Leu
TAG
[ENA]
¡û
>WENV170750129
LUMG01000392
[LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m
7205
7118
-
Leu
TAG
[ENA]
¡û
>WENV170756750
LUMP01000918
[LUMP] marine metagenome; Red Sea water column Station 12 - depth 47m
4533
4446
-
Leu
TAG
[ENA]
¡û
>WENV170944830
MDUO01005907
[MDUO] marine metagenome; 30 m water sample from station 6
187
100
-
Leu
TAG
[ENA]
¡û
>W1910126242
BGKI01000012
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
8201
8288
+
Leu
TAG
[ENA]
¡û
>W1910572952
JNVL01000001
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL]
81004
81091
+
Leu
TAG
[ENA]
¡û
>W1910573208
JOSY01000006
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
23282
23195
-
Leu
TAG
[ENA]
¡û
>W1910573251
JOTA01000016
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-B03 [JOTA]
37082
37169
+
Leu
TAG
[ENA]
¡û
>W1910573298
JOTD01000033
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
19268
19181
-
Leu
TAG
[ENA]
¡û
>A241001161
CP026995
Nitrososphaerota
Nitrosopumilus ureiphilus PS0 [CP026995]
250816
250729
-
Leu
TAG
-
¡û
>A241001335
CP030847
Nitrososphaerota
Nitrosarchaeum sp. AC2 [CP030847]
252900
252814
-
Leu
TAG
-
¡û
>W2010080326
BGKI01000012
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
8201
8288
+
Leu
TAG
[ENA]
¡û
>W2010758610
JNVL01000001
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL]
81004
81091
+
Leu
TAG
[ENA]
¡û
>W2010758866
JOSY01000006
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
23282
23195
-
Leu
TAG
[ENA]
¡û
>W2010758909
JOTA01000016
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-B03 [JOTA]
37082
37169
+
Leu
TAG
[ENA]
¡û
>W2010758956
JOTD01000033
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
19268
19181
-
Leu
TAG
[ENA]
¡û
>W2011230947
PXYC01000002
Nitrososphaerota
Nitrosopumilus sp. b2 [PXYC]
123833
123746
-
Leu
TAG
[ENA]
¡û
>W2011230973
PXYD01000007
Nitrososphaerota
Nitrosopumilus sp. b3 [PXYD]
151669
151582
-
Leu
TAG
[ENA]
¡û
>W1610000542
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
1104616
1104529
-
Leu
TAG
[ENA]
¡û
>W1610002162
AEGP01000044
Nitrososphaerota
Candidatus Nitrosarchaeum limnium limnia SFB1 [AEGP]
5154
5240
+
Leu
TAG
[ENA]
¡û
>W1610003089
AEXL02000045
Nitrososphaerota
Candidatus Nitrosopumilus salaria salaria BD31 [AEXL]
5197
5284
+
Leu
TAG
[ENA]
¡û
>W1610003310
AFPU01000001
Nitrososphaerota
Nitrosarchaeum koreense koreensis MY1 [AFPU]
154728
154642
-
Leu
TAG
[ENA]
¡û
>W1610005404
AJVI01000005
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
154849
154762
-
Leu
TAG
[ENA]
¡û
>W1610005431
AJVJ01000015
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
105556
105469
-
Leu
TAG
[ENA]
¡û
>W1610597526
LFEY01000022
Nitrososphaerota
Thaumarchaeota archaeon casp-thauma3 [LFEY]
5556
5643
+
Leu
TAG
[ENA]
¡û
>W1610617250
LGTD01000391
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
1095
1008
-
Leu
TAG
[ENA]
¡û
>W1610855529
LQMW01000024
Nitrososphaerota
Nitrosopumilus sp. Nsub [LQMW]
6052
6139
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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