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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100310 (84 seq.)
>W1710994924
LPZN01000003
Actinomycetota
Rhodococcus gordoniae [LPZN]
120556
120471
-
Tyr
GTA
[ENA]
¡û
>W1711050110
LRRH01000012
Actinomycetota
Rhodococcus phenolicus [LRRH]
44147
44232
+
Tyr
GTA
[ENA]
¡û
>W1711050205
LRRI01000098
Actinomycetota
Rhodococcus pyridinivorans [LRRI]
20325
20410
+
Tyr
GTA
[ENA]
¡û
>W1711050298
LRRK01000047
Actinomycetota
Rhodococcus rhodochrous [LRRK]
27633
27718
+
Tyr
GTA
[ENA]
¡û
>W1711050328
LRRL01000027
Actinomycetota
Rhodococcus ruber [LRRL]
17112
17027
-
Tyr
GTA
[ENA]
¡û
>W1711129365
LUTX01000002
Actinomycetota
Rhodococcus sp. HS-D2 [LUTX]
197329
197414
+
Tyr
GTA
[ENA]
¡û
>W1711281655
LZMJ01000034
Actinomycetota
Rhodococcus sp. 852002-51564_SCH6189132-a [LZMJ]
85896
85811
-
Tyr
GTA
[ENA]
¡û
>W1711539265
MLYX02000004
Actinomycetota
Rhodococcus sp. M8 [MLYX]
1106111
1106026
-
Tyr
GTA
[ENA]
¡û
>C171039187
CP015529
Actinomycetota
Rhodococcus sp. WB1 [CP015529]
1247908
1247993
+
Tyr
GTA
-
¡û
>C171051586
CP016819
Actinomycetota
Rhodococcus sp. p52 [CP016819]
250329
250244
-
Tyr
GTA
-
¡û
>C171054976
CP017014
Actinomycetota
Rhodococcus sp. WMMA185 [CP017014]
2759192
2759107
-
Tyr
GTA
-
¡û
>C171072238
CP018063
Actinomycetota
Rhodococcus sp. 2G [CP018063]
3082644
3082559
-
Tyr
GTA
-
¡û
>W131059053
ANGC01000005
Actinomycetota
Rhodococcus ruber Chol-4 [ANGC]
127270
127185
-
Tyr
GTA
[ENA]
¡û
>W131087859
AODO01000028
Actinomycetota
Rhodococcus triatomae BKS 15-14 [AODO]
100714
100799
+
Tyr
GTA
[ENA]
¡û
>W131089892
AOEX01000057
Actinomycetota
Rhodococcus ruber BKS 20-38 [AOEX]
231782
231867
+
Tyr
GTA
[ENA]
¡û
>W131112001
APMY01000065
Actinomycetota
Rhodococcus rhodnii LMG 5362 [APMY]
11497
11582
+
Tyr
GTA
[ENA]
¡û
>W131251263
CAVJ010000161
Actinomycetota
Rhodococcus aetherivorans EsD8 [CAVJ]
12887
12972
+
Tyr
GTA
[ENA]
¡û
>W141092554
AVAE01000020
Actinomycetota
Rhodococcus aetherivorans BCP1 [AVAE]
139739
139654
-
Tyr
GTA
[ENA]
¡û
>W141202649
AZHI01000142
Actinomycetota
Rhodococcus rhodochrous ATCC 21198 [AZHI]
12887
12972
+
Tyr
GTA
[ENA]
¡û
>W141243888
CAJY01000005
Actinomycetota
Tsukamurella sp. 1534 [CAJY]
320109
320024
-
Tyr
GTA
[ENA]
¡û
>WENV183627851
OOGL01061276
[OOGL] marine metagenome; sea ice
307
224
-
Tyr
GTA
[ENA]
¢þ
>W09110282
ABVA01000002
Actinomycetota
Tsukamurella paurometabola DSM 20162 [ABVA]
778759
778844
+
Tyr
GTA
[ENA]
¡û
>C181060858
CP022208
Actinomycetota
Rhodococcus pyridinivorans TG9 [CP022208]
4297198
4297114
-
Tyr
GTA
-
¡û
>C181074081
CP022915
Actinomycetota
Rhodococcus pyridinivorans GF3 [CP022915]
2412354
2412438
+
Tyr
GTA
-
¡û
>C181099309
CP024315
Actinomycetota
Rhodococcus ruber P14 [CP024315]
1918758
1918674
-
Tyr
GTA
-
¡û
>C181107741
CP024890
Actinomycetota
Rhodococcus ruber YYL [CP024890]
3353802
3353718
-
Tyr
GTA
-
¡û
>C181175137
CP029146
Actinomycetota
Rhodococcus ruber SD3 [CP029146]
3803779
3803695
-
Tyr
GTA
-
¡û
>C181215408
LS483468
Actinomycetota
Rhodococcus coprophilus NCTC10994 [LS483468]
3881177
3881262
+
Tyr
GTA
-
¡û
>C181225007
LT906450
Actinomycetota
Rhodococcus rhodochrous NCTC10210 [LT906450]
3944500
3944416
-
Tyr
GTA
-
¡û
>C191025693
CP023714
Actinomycetota
Rhodococcus ruber YC-YT1 [CP023714]
4181027
4180943
-
Tyr
GTA
-
¡û
>C191139082
CP035319
Actinomycetota
Rhodococcus sp. ABRD24 [CP035319]
1486500
1486417
-
Tyr
GTA
-
¡û
>C191157583
CP038030
Actinomycetota
Rhodococcus ruber R1 [CP038030]
3819826
3819742
-
Tyr
GTA
-
¡û
>C191166012
CP039432
Actinomycetota
Rhodococcus sp. SGAir0479 [CP039432]
3080298
3080213
-
Tyr
GTA
-
¡û
>C191182141
CP040719
Actinomycetota
Rhodococcus pyridinivorans YF3 [CP040719]
3677370
3677286
-
Tyr
GTA
-
¡û
>W141702546
JMLO01000005
Actinomycetota
Rhodococcus sp. UNC363MFTsu5.1 [JMLO]
144524
144441
-
Tyr
GTA
[ENA]
¡û
>C141011371
CP006996
Actinomycetota
Rhodococcus pyridinivorans SB3094 [CP006996]
1979065
1978980
-
Tyr
GTA
[Ensembl]
¡û
>W1910584615
JXXO01000131
Actinomycetota
Rhodococcus ruber OA1 [JXXO]
5158
5242
+
Tyr
GTA
[ENA]
¡û
>W1910888373
NERM01000003
Actinomycetota
Rhodococcus sp. BUPNP1 [NERM]
192935
193019
+
Tyr
GTA
[ENA]
¡û
>W1911492020
OBDL01000005
Actinomycetota
Rhodococcus sp. OK270 [OBDL]
29508
29592
+
Tyr
GTA
[ENA]
¡û
>W1810050267
PCZU01000272
Actinomycetota
Rhodococcus sp. ENV425 [PCZU]
53498
53583
+
Tyr
GTA
[ENA]
¡û
>W1810173156
PJMW01000002
Actinomycetota
Nocardia fluminea DSM 44489 [PJMW]
2350835
2350918
+
Tyr
GTA
[ENA]
¡û
>W1810367237
PVXK01000001
Actinomycetota
Rhodococcus rhodochrous EP4 [PVXK]
4955372
4955456
+
Tyr
GTA
[ENA]
¡û
>W1810477653
QAOZ01000005
Actinomycetota
Rhodococcus sp. OK611 [QAOZ]
29508
29592
+
Tyr
GTA
[ENA]
¡û
>W1810762959
QQAT01000002
Actinomycetota
Rhodococcus sp. AG1013 [QQAT]
197271
197354
+
Tyr
GTA
[ENA]
¡û
>C151080808
CP011341
Actinomycetota
Rhodococcus aetherivorans IcdP1 [CP011341]
4251208
4251123
-
Tyr
GTA
[Ensembl]
¡û
>W1510001791
AZYO01000032
Actinomycetota
Rhodococcus rhodochrous KG-21 [AZYO]
29648
29733
+
Tyr
GTA
[ENA]
¡û
>W1510020119
BBXP01000023
Actinomycetota
Rhodococcus rhodochrous NBRC 16069 [BBXP]
99449
99364
-
Tyr
GTA
[ENA]
¡û
>W1510053302
CCSD01000056
Actinomycetota
Rhodococcus ruber [CCSD]
18216
18301
+
Tyr
GTA
[ENA]
¡û
>C10113667
CP001966
Actinomycetota
Tsukamurella paurometabola DSM 20162 [CP001966]
754033
754118
+
Tyr
GTA
[Ensembl]
¡û
>W1510649797
CVQP01000007
Actinomycetota
Rhodococcus sp. RD6.2 [CVQP]
528393
528476
+
Tyr
GTA
[ENA]
¡û
>W1511303356
JPJJ01000001
Actinomycetota
Rhodococcus sp. p52 [JPJJ]
117141
117056
-
Tyr
GTA
[ENA]
¡û
>W1511401646
JTIZ01000089
Actinomycetota
Rhodococcus sp. Chr-9 [JTIZ]
85149
85064
-
Tyr
GTA
[ENA]
¡û
>W1511640466
LDUF01000021
Actinomycetota
Rhodococcus ruber P25 [LDUF]
46096
46011
-
Tyr
GTA
[ENA]
¡û
>W11156001
AFAQ01002077
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
379042
379127
+
Tyr
GTA
[ENA]
¡û
>W121021575
AGVW02000094
Actinomycetota
Rhodococcus rhodochrous BKS6-46 [AGVW]
6735
6650
-
Tyr
GTA
[ENA]
¡û
>W121024651
AHBW01000040
Actinomycetota
Rhodococcus pyridinivorans AK37 [AHBW]
53038
52953
-
Tyr
GTA
[ENA]
¡û
>W121060030
AJFC01000009
Actinomycetota
Rhodococcus sp. P14 [AJFC]
34240
34155
-
Tyr
GTA
[ENA]
¡û
>W121068642
AJVB01000056
Actinomycetota
Rhodococcus sp. R1101 [AJVB]
7375
7460
+
Tyr
GTA
[ENA]
¡û
>W1610040478
AZXY01000001
Actinomycetota
Rhodococcus pyridinivorans KG-16 [AZXY]
979508
979593
+
Tyr
GTA
[ENA]
¡û
>W1610068702
BCRN01000019
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
45565
45482
-
Tyr
GTA
[ENA]
¡û
>W1610187902
FBUK01000015
Actinomycetota
Rhodococcus rhodochrous [FBUK]
88508
88593
+
Tyr
GTA
[ENA]
¡û
>W1610849581
LPZN01000003
Actinomycetota
Rhodococcus gordoniae [LPZN]
120556
120471
-
Tyr
GTA
[ENA]
¡û
>W1610891239
LRRH01000012
Actinomycetota
Rhodococcus phenolicus [LRRH]
44147
44232
+
Tyr
GTA
[ENA]
¡û
>W1610891334
LRRI01000098
Actinomycetota
Rhodococcus pyridinivorans [LRRI]
20325
20410
+
Tyr
GTA
[ENA]
¡û
>W1610891427
LRRK01000047
Actinomycetota
Rhodococcus rhodochrous [LRRK]
27633
27718
+
Tyr
GTA
[ENA]
¡û
>W1610891457
LRRL01000027
Actinomycetota
Rhodococcus ruber [LRRL]
17112
17027
-
Tyr
GTA
[ENA]
¡û
>W1610940438
LUTX01000002
Actinomycetota
Rhodococcus sp. HS-D2 [LUTX]
197329
197414
+
Tyr
GTA
[ENA]
¡û
>W1611040940
LZMJ01000034
Actinomycetota
Rhodococcus sp. 852002-51564_SCH6189132-a [LZMJ]
85896
85811
-
Tyr
GTA
[ENA]
¡û
>W1710037592
AZXY01000001
Actinomycetota
Rhodococcus pyridinivorans KG-16 [AZXY]
979508
979593
+
Tyr
GTA
[ENA]
¡û
>W1710066075
BCRN01000019
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
45565
45482
-
Tyr
GTA
[ENA]
¡û
>W1710072001
BCXA01000049
Actinomycetota
Rhodococcus maanshanensis NBRC 100610 [BCXA]
32397
32314
-
Tyr
GTA
[ENA]
¡û
>W1710072080
BCXC01000003
Actinomycetota
Rhodococcus pyridinivorans JCM 10940 = NBRC 100608 [BCXC]
122297
122212
-
Tyr
GTA
[ENA]
¡û
>W1710072119
BCXD01000001
Actinomycetota
Rhodococcus rhodnii NBRC 100604 [BCXD]
260000
259915
-
Tyr
GTA
[ENA]
¡û
>W1710072192
BCXE01000020
Actinomycetota
Rhodococcus ruber NBRC 15591 [BCXE]
51576
51661
+
Tyr
GTA
[ENA]
¡û
>W1710072247
BCXF01000009
Actinomycetota
Rhodococcus triatomae NBRC 103116 [BCXF]
132788
132703
-
Tyr
GTA
[ENA]
¡û
>W1710072266
BCXG01000001
Actinomycetota
Rhodococcus tukisamuensis NBRC 100609 [BCXG]
284602
284685
+
Tyr
GTA
[ENA]
¡û
>W1710072376
BCXI01000013
Actinomycetota
Rhodococcus zopfii NBRC 100606 = JCM 9919 [BCXI]
6777
6692
-
Tyr
GTA
[ENA]
¡û
>W1710076521
BDAM01000011
Actinomycetota
Rhodococcus coprophilus NBRC 100603 [BDAM]
200721
200806
+
Tyr
GTA
[ENA]
¡û
>W1710189518
FBUK01000015
Actinomycetota
Rhodococcus rhodochrous [FBUK]
88508
88593
+
Tyr
GTA
[ENA]
¡û
>W1710513351
FNAB01000009
Actinomycetota
Rhodococcus tukisamuensis [FNAB]
147259
147176
-
Tyr
GTA
[ENA]
¡û
>W1710517724
FNDN01000006
Actinomycetota
Rhodococcus triatomae [FNDN]
137399
137484
+
Tyr
GTA
[ENA]
¡û
>W1710534493
FNRX01000002
Actinomycetota
Rhodococcus pyridinivorans [FNRX]
1737494
1737579
+
Tyr
GTA
[ENA]
¡û
>W1710544507
FOAW01000003
Actinomycetota
Rhodococcus maanshanensis [FOAW]
243380
243463
+
Tyr
GTA
[ENA]
¡û
>W1710608415
FXAV01000009
Actinomycetota
Rhodococcus rhodochrous J3 [FXAV]
26708
26623
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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