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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100501 (30 seq.)
>W1711506991
MKXD01000002
Gammaproteobacteria
Enterobacter kobei [MKXD]
2688047
2687962
-
Leu
TAA
[ENA]
¡û
>W1711606465
MORB01000001
Gammaproteobacteria
Enterobacter sp. SA187 Sa187 [MORB]
1678056
1677971
-
Leu
TAA
[ENA]
¡û
>W1711751043
MUNJ01000002
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
236689
236604
-
Leu
TAA
[ENA]
¡û
>C171108490
CP020466
Gammaproteobacteria
Edwardsiella ictaluri RUSVM-1 [CP020466]
787877
787792
-
Leu
TAA
-
¡û
>W131205513
ATDT01000023
Gammaproteobacteria
Cedecea davisae DSM 4568 [ATDT]
189870
189785
-
Leu
TAA
[ENA]
¡û
>W131157077
AQQO01000021
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
124007
123922
-
Leu
TAA
[ENA]
¡û
>WENV183065359
OLIJ01000022
[OLIJ] metagenome; faeces
66845
66930
+
Leu
TAA
[ENA]
¢þ
>WENV183780881
PPYF01188092
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7858
7943
+
Leu
TAA
[ENA]
¢þ
>C181015815
CP014136
Gammaproteobacteria
Gibbsiella quercinecans FRB97 [CP014136]
262777
262692
-
Leu
TAA
-
¡û
>C181036416
CP019113
Gammaproteobacteria
Enterobacter sp. SA187 [CP019113]
3736450
3736365
-
Leu
TAA
-
¡û
>C181083605
CP023525
Gammaproteobacteria
Cedecea neteri FDAARGOS_392 [CP023525]
1799968
1800053
+
Leu
TAA
-
¡û
>C181160605
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
1025755
1025670
-
Leu
TAA
-
¡û
>C191199643
LR134201
Gammaproteobacteria
Cedecea lapagei NCTC11466 [LR134201]
1719863
1719948
+
Leu
TAA
-
¡û
>W1910341350
FTPH01000007
Gammaproteobacteria
Enterobacter cloacae [FTPH]
598961
598876
-
Leu
TAA
[ENA]
¡û
>W1910502220
FYBC01000001
Gammaproteobacteria
Enterobacter kobei [FYBC]
531114
531029
-
Leu
TAA
[ENA]
¡û
>W1910751004
MJLU01000021
Gammaproteobacteria
Gibbsiella quercinecans FRB97 [MJLU]
66017
66102
+
Leu
TAA
[ENA]
¡û
>W1910751029
MJLV01000001
Gammaproteobacteria
Gibbsiella quercinecans FRB124 [MJLV]
56012
55927
-
Leu
TAA
[ENA]
¡û
>W1910751136
MJLW01000021
Gammaproteobacteria
Gibbsiella quercinecans N78 [MJLW]
27761
27676
-
Leu
TAA
[ENA]
¡û
>W1810423062
PYSI01000001
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
409421
409506
+
Leu
TAA
[ENA]
¡û
>C151009218
CP006568
Gammaproteobacteria
Candidatus Sodalis pierantonius str. SOPE [CP006568]
1902659
1902574
-
Leu
TAA
[Ensembl]
¡û
>C151051440
CP009451
Gammaproteobacteria
Cedecea neteri SSMD04 [CP009451]
4517105
4517190
+
Leu
TAA
[Ensembl]
¡û
>C151051808
CP009459
Gammaproteobacteria
Cedecea neteri ND14a [CP009459]
3870071
3869986
-
Leu
TAA
[Ensembl]
¡û
>C151076348
CP011077
Gammaproteobacteria
Klebsiella michiganensis RC10 [CP011077]
2924648
2924563
-
Leu
TAA
[Ensembl]
¡û
>W1511346526
JRHG01000014
Gammaproteobacteria
Cedecea neteri SSMD04 [JRHG]
71693
71608
-
Leu
TAA
[ENA]
¡û
>W1511347955
JRKB01000024
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
215
300
+
Leu
TAA
[ENA]
¡û
>W1511478904
JWHQ01000026
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
238140
238225
+
Leu
TAA
[ENA]
¡û
>C161109339
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
1346162
1346247
+
Leu
TAA
[Ensembl]
¡û
>W1610070650
BCTL01000001
Gammaproteobacteria
Cedecea neteri NBRC 105707 = ATCC 33855 [BCTL]
24734
24819
+
Leu
TAA
[ENA]
¡û
>W121102542
AKXM01000004
Gammaproteobacteria
Enterobacter sp. Ag1 [AKXM]
130942
131027
+
Leu
TAA
[ENA]
¡û
>W1710597705
FTNJ01000002
Gammaproteobacteria
Enterobacter kobei [FTNJ]
530241
530156
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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