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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100992 (62 seq.)
>W131235829
AULW01000026
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
172114
172029
-
Tyr
GTA
[ENA]
¡û
>W141239617
CAES01000024
Bacillota
Paenibacillus senegalensis JC66 [CAES]
7650
7565
-
Tyr
GTA
[ENA]
¡û
>W141251978
CBRA020000029
Bacillota
Paenibacillus sp. P22 [CBRA]
42037
41952
-
Tyr
GTA
[ENA]
¡û
>WENV183730034
PJTR01000385
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
34293
34208
-
Tyr
GTA
[ENA]
¢þ
>W141462483
JFHV01000151
Bacillota
Paenibacillus darwinianus [JFHV]
36763
36678
-
Tyr
GTA
[ENA]
¡û
>W141462486
JFHV01000151
Bacillota
Paenibacillus darwinianus [JFHV]
36449
36364
-
Tyr
GTA
[ENA]
¡û
>C191044797
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
734526
734611
+
Tyr
GTA
-
¡û
>C191044813
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
1185530
1185615
+
Tyr
GTA
-
¡û
>C191044863
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
5709531
5709446
-
Tyr
GTA
-
¡û
>C191177139
CP040396
Bacillota
Paenibacillus algicola HB172198 [CP040396]
139948
140033
+
Tyr
GTA
-
¡û
>C191177179
CP040396
Bacillota
Paenibacillus algicola HB172198 [CP040396]
3667452
3667367
-
Tyr
GTA
-
¡û
>W1910067490
BFBX01000100
Bacillota
Paenibacillus sp. 598K [BFBX]
945
1030
+
Tyr
GTA
[ENA]
¡û
>W1910126359
BGMM01000010
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
1211
1296
+
Tyr
GTA
[ENA]
¡û
>W1910154758
BIMA01000030
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
64835
64750
-
Tyr
GTA
[ENA]
¡û
>W1910154788
BIMA01000141
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
15369
15284
-
Tyr
GTA
[ENA]
¡û
>W1910155275
BIML01000016
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
44783
44698
-
Tyr
GTA
[ENA]
¡û
>W1910155292
BIML01000034
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
516
601
+
Tyr
GTA
[ENA]
¡û
>W1910175745
BJCS01000017
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
445
530
+
Tyr
GTA
[ENA]
¡û
>W1910891861
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
1575019
1575104
+
Tyr
GTA
[ENA]
¡û
>W1911144789
NPBY01000144
Bacillota
Paenibacillus campinasensis 7537-G1 [NPBY]
369
284
-
Tyr
GTA
[ENA]
¡û
>W1911178126
NQLZ01000016
Bacillota
Paenibacillus sp. 7541 [NQLZ]
242935
242850
-
Tyr
GTA
[ENA]
¡û
>W1810674248
QJVJ01000016
Bacillota
Paenibacillus flagellatus DXL2 [QJVJ]
154701
154616
-
Tyr
GTA
[ENA]
¡û
>W1810679722
QKRB01000031
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
172560
172475
-
Tyr
GTA
[ENA]
¡û
>W1810679767
QKRB01000063
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
54029
53944
-
Tyr
GTA
[ENA]
¡û
>C151048033
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
189976
190061
+
Tyr
GTA
[Ensembl]
¡û
>C151048089
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
4771033
4770948
-
Tyr
GTA
[Ensembl]
¡û
>C151048261
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
5061292
5061207
-
Tyr
GTA
[Ensembl]
¡û
>C151075898
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
2446114
2446199
+
Tyr
GTA
[Ensembl]
¡û
>C151075941
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
1187766
1187681
-
Tyr
GTA
[Ensembl]
¡û
>C151075963
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
699811
699726
-
Tyr
GTA
[Ensembl]
¡û
>C151077310
CP011114
Bacillota
Paenibacillus durus ATCC 35681 [CP011114]
4007836
4007751
-
Tyr
GTA
[Ensembl]
¡û
>W1510081452
CDSE01000087
Bacillota
Paenibacillus dakarensis FF9 [CDSE]
93038
92953
-
Tyr
GTA
[ENA]
¡û
>W1511499668
JXAK01000022
Bacillota
Paenibacillus sp. VKM B-2647 [JXAK]
1246
1331
+
Tyr
GTA
[ENA]
¡û
>W1511499712
JXAK01000137
Bacillota
Paenibacillus sp. VKM B-2647 [JXAK]
1250
1165
-
Tyr
GTA
[ENA]
¡û
>W1511541255
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
5229553
5229638
+
Tyr
GTA
[ENA]
¡û
>W1511586966
LAZU01000034
Bacillota
Paenibacillus sp. DMB20 [LAZU]
1077
1162
+
Tyr
GTA
[ENA]
¡û
>W1511586986
LAZU01000053
Bacillota
Paenibacillus sp. DMB20 [LAZU]
1352
1437
+
Tyr
GTA
[ENA]
¡û
>W11180982
AGIP01000014
Bacillota
Paenibacillus lactis 154 [AGIP]
2717
2802
+
Tyr
GTA
[ENA]
¡û
>W11181003
AGIP01000025
Bacillota
Paenibacillus lactis 154 [AGIP]
969
1054
+
Tyr
GTA
[ENA]
¡û
>C161058252
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
4085425
4085340
-
Tyr
GTA
[Ensembl]
¡û
>C161058285
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
3443809
3443724
-
Tyr
GTA
[Ensembl]
¡û
>C161058295
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
3192705
3192620
-
Tyr
GTA
[Ensembl]
¡û
>C161058342
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
4664862
4664777
-
Tyr
GTA
[Ensembl]
¡û
>W1610048263
BBEA01000012
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
499
584
+
Tyr
GTA
[ENA]
¡û
>W1610048284
BBEA01000067
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
486
571
+
Tyr
GTA
[ENA]
¡û
>W1610048299
BBEA01000073
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
24162
24077
-
Tyr
GTA
[ENA]
¡û
>W1610048417
BBEC01000031
Bacillota
Paenibacillus sp. YK5 [BBEC]
243
328
+
Tyr
GTA
[ENA]
¡û
>W1610048437
BBEC01000043
Bacillota
Paenibacillus sp. YK5 [BBEC]
745
830
+
Tyr
GTA
[ENA]
¡û
>W1610048461
BBEC01000127
Bacillota
Paenibacillus sp. YK5 [BBEC]
4522
4437
-
Tyr
GTA
[ENA]
¡û
>W1610095268
CYUM01000001
Bacillota
Gorillibacterium timonense SN4 [CYUM]
2837
2752
-
Tyr
GTA
[ENA]
¡û
>W1610095289
CYUM01000006
Bacillota
Gorillibacterium timonense SN4 [CYUM]
994
1079
+
Tyr
GTA
[ENA]
¡û
>W1710044773
BBEA01000012
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
499
584
+
Tyr
GTA
[ENA]
¡û
>W1710044794
BBEA01000067
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
486
571
+
Tyr
GTA
[ENA]
¡û
>W1710044809
BBEA01000073
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
24162
24077
-
Tyr
GTA
[ENA]
¡û
>W1710044927
BBEC01000031
Bacillota
Paenibacillus sp. YK5 [BBEC]
243
328
+
Tyr
GTA
[ENA]
¡û
>W1710044947
BBEC01000043
Bacillota
Paenibacillus sp. YK5 [BBEC]
745
830
+
Tyr
GTA
[ENA]
¡û
>W1710044971
BBEC01000127
Bacillota
Paenibacillus sp. YK5 [BBEC]
4522
4437
-
Tyr
GTA
[ENA]
¡û
>W1710098063
CYUM01000001
Bacillota
Gorillibacterium timonense SN4 [CYUM]
2837
2752
-
Tyr
GTA
[ENA]
¡û
>W1710098084
CYUM01000006
Bacillota
Gorillibacterium timonense SN4 [CYUM]
994
1079
+
Tyr
GTA
[ENA]
¡û
>W1710518331
FNDY01000015
Bacillota
Paenibacillus naphthalenovorans [FNDY]
269
354
+
Tyr
GTA
[ENA]
¡û
>W1710595426
FTLY01000003
Bacillota
Paenibacillus sp. RU4X [FTLY]
604093
604008
-
Tyr
GTA
[ENA]
¡û
>W1710597324
FTND01000003
Bacillota
Paenibacillus sp. RU4T [FTND]
944
1029
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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