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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101124 (108 seq.)
>W1711174322
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59542
59626
+
Leu
TAG
[ENA]
¡û
>W1711621609
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
719642
719726
+
Leu
TAG
[ENA]
¡û
>W1711934393
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
179782
179698
-
Leu
TAG
[ENA]
¡û
>W1711934397
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
179317
179233
-
Leu
TAG
[ENA]
¡û
>C171108559
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1231420
1231504
+
Leu
TAG
-
¡û
>C171108563
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1231914
1231998
+
Leu
TAG
-
¡û
>WENV013075
AACY020358049
Marine microbial communities from Global Ocean Sampling (GOS)
98
184
+
Leu
TAG
[ENA]
>C020923
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
940259
940343
+
Leu
TAG
[Ensembl]
¡û
>C021950
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
843884
843968
+
Leu
TAG
[Ensembl]
¡û
>C022222
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1184772
1184856
+
Leu
TAG
[Ensembl]
¡û
>C022320
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1176729
1176813
+
Leu
TAG
[Ensembl]
¡û
>C022324
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1177194
1177278
+
Leu
TAG
[Ensembl]
¡û
>C022416
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1239076
1239160
+
Leu
TAG
[Ensembl]
¡û
>C022420
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1239541
1239625
+
Leu
TAG
[Ensembl]
¡û
>C022523
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1197938
1198022
+
Leu
TAG
[Ensembl]
¡û
>w024927
AAZC01000072
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
887
973
+
Leu
TAG
[ENA]
¡û
>w022924
AAWY01000064
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
14176
14090
-
Leu
TAG
[ENA]
¡û
>w018660
AATK01000076
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
13084
12998
-
Leu
TAG
[ENA]
¡û
>w007657
AAIU01000006
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
35233
35147
-
Leu
TAG
[ENA]
¡û
>W141171254
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
27666
27582
-
Leu
TAG
[ENA]
¡û
>C08008660
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3930613
3930532
-
Leu
TAG
[Ensembl]
¡û
>W141227905
BALN01000017
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
62822
62906
+
Leu
TAG
[ENA]
¡û
>W141277729
JAEU01000019
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
55396
55312
-
Leu
TAG
[ENA]
¡û
>C08010775
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4496931
4496850
-
Leu
TAG
[Ensembl]
¡û
>C08010778
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4496501
4496420
-
Leu
TAG
[Ensembl]
¡û
>C08010780
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4496194
4496113
-
Leu
TAG
[Ensembl]
¡û
>C08010782
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4495928
4495847
-
Leu
TAG
[Ensembl]
¡û
>WENV021004
AACY020561423
Marine microbial communities from Global Ocean Sampling (GOS)
266
352
+
Leu
TAG
[ENA]
>C181016848
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4420821
4420737
-
Leu
TAG
-
¡û
>C181057585
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2348980
2348896
-
Leu
TAG
-
¡û
>C181061293
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
1088247
1088331
+
Leu
TAG
-
¡û
>C181061297
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
1088788
1088872
+
Leu
TAG
-
¡û
>C181061299
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
1089048
1089132
+
Leu
TAG
-
¡û
>C181164490
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033113
3033197
+
Leu
TAG
-
¡û
>C181164494
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033599
3033683
+
Leu
TAG
-
¡û
>C181165412
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3744856
3744940
+
Leu
TAG
-
¡û
>C181167922
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648816
3648732
-
Leu
TAG
-
¡û
>C181167926
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648359
3648275
-
Leu
TAG
-
¡û
>W141520039
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
53136
53220
+
Leu
TAG
[ENA]
¡û
>C191117233
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090634
4090550
-
Leu
TAG
-
¡û
>C191148761
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1429203
1429119
-
Leu
TAG
-
¡û
>C191148765
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1428727
1428643
-
Leu
TAG
-
¡û
>C191148767
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1428447
1428363
-
Leu
TAG
-
¡û
>C191173247
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224273
1224189
-
Leu
TAG
-
¡û
>C191185836
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907770
907854
+
Leu
TAG
-
¡û
>C191206469
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3752221
3752137
-
Leu
TAG
-
¡û
>W09102913
AAIO01000137
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
330
414
+
Leu
TAG
[ENA]
¡û
>W09103096
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
209787
209703
-
Leu
TAG
[ENA]
¡û
>W09104087
AALH01000080
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
328
412
+
Leu
TAG
[ENA]
¡û
>W09104286
AALN01000013
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
4202
4286
+
Leu
TAG
[ENA]
¡û
>W09104290
AALN01000013
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
4668
4752
+
Leu
TAG
[ENA]
¡û
>W09104636
AALX01000087
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
118
202
+
Leu
TAG
[ENA]
¡û
>W09104640
AALX01000087
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
583
667
+
Leu
TAG
[ENA]
¡û
>C09109146
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1307280
1307364
+
Leu
TAG
[Ensembl]
¡û
>W1910676971
MCTY01000215
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
24835
24751
-
Leu
TAG
[ENA]
¡û
>W1910676975
MCTY01000215
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
24339
24255
-
Leu
TAG
[ENA]
¡û
>W1910679504
MCVG01000115
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
146088
146004
-
Leu
TAG
[ENA]
¡û
>W1910679508
MCVG01000115
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
145592
145508
-
Leu
TAG
[ENA]
¡û
>W1910913784
NHRI01000012
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
37699
37615
-
Leu
TAG
[ENA]
¡û
>W1911809452
QYYH01000019
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
51510
51594
+
Leu
TAG
[ENA]
¡û
>W1911809456
QYYH01000019
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
51961
52045
+
Leu
TAG
[ENA]
¡û
>W1810073430
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
260079
259995
-
Leu
TAG
[ENA]
¡û
>W1810155313
PJAP01000734
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
127
43
-
Leu
TAG
[ENA]
¡û
>W1810156687
PJBL01000016
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
199045
198961
-
Leu
TAG
[ENA]
¡û
>W1810156690
PJBL01000016
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
198553
198469
-
Leu
TAG
[ENA]
¡û
>W1810156692
PJBL01000016
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
198240
198156
-
Leu
TAG
[ENA]
¡û
>W1810156789
PJBM01000256
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
29214
29298
+
Leu
TAG
[ENA]
¡û
>W1810156792
PJBM01000256
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
29706
29790
+
Leu
TAG
[ENA]
¡û
>W1810156794
PJBM01000256
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
30019
30103
+
Leu
TAG
[ENA]
¡û
>W1810157821
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
27941
28025
+
Leu
TAG
[ENA]
¡û
>W1810157862
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4225278
4225362
+
Leu
TAG
[ENA]
¡û
>W1810423000
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2465402
2465318
-
Leu
TAG
[ENA]
¡û
>W1810423004
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2464928
2464844
-
Leu
TAG
[ENA]
¡û
>W1810587772
QFLG01000049
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
4374
4290
-
Leu
TAG
[ENA]
¡û
>W1810721530
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48476
48560
+
Leu
TAG
[ENA]
¡û
>W1810721534
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48948
49032
+
Leu
TAG
[ENA]
¡û
>W10119028
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303488
303404
-
Leu
TAG
[ENA]
¡û
>W10126049
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508563
508479
-
Leu
TAG
[ENA]
¡û
>W10126053
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508077
507993
-
Leu
TAG
[ENA]
¡û
>W10126357
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303661
303745
+
Leu
TAG
[ENA]
¡û
>C11119379
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1319740
1319824
+
Leu
TAG
[Ensembl]
¡û
>W1511366742
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
26382
26466
+
Leu
TAG
[ENA]
¡û
>W1511366746
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
26880
26964
+
Leu
TAG
[ENA]
¡û
>W1511366749
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
27319
27403
+
Leu
TAG
[ENA]
¡û
>W1511366751
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
27579
27663
+
Leu
TAG
[ENA]
¡û
>W1511366753
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
27839
27923
+
Leu
TAG
[ENA]
¡û
>C11119517
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912760
3912676
-
Leu
TAG
[Ensembl]
¡û
>C11119521
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912287
3912203
-
Leu
TAG
[Ensembl]
¡û
>C11119619
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
4001509
4001425
-
Leu
TAG
[Ensembl]
¡û
>W1511403529
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
1090803
1090887
+
Leu
TAG
[ENA]
¡û
>C11121556
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3391554
3391470
-
Leu
TAG
[Ensembl]
¡û
>W11125200
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303488
303404
-
Leu
TAG
[ENA]
¡û
>W11133310
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508563
508479
-
Leu
TAG
[ENA]
¡û
>W11133314
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508077
507993
-
Leu
TAG
[ENA]
¡û
>W11133618
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303661
303745
+
Leu
TAG
[ENA]
¡û
>W11178473
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
164496
164412
-
Leu
TAG
[ENA]
¡û
>W1610460580
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413804
413720
-
Leu
TAG
[ENA]
¡û
>W1610460583
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413371
413287
-
Leu
TAG
[ENA]
¡û
>W1610460585
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413064
412980
-
Leu
TAG
[ENA]
¡û
>W1610460587
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
412745
412661
-
Leu
TAG
[ENA]
¡û
>W1610617878
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41315
41399
+
Leu
TAG
[ENA]
¡û
>W1610982635
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59542
59626
+
Leu
TAG
[ENA]
¡û
>W1710460144
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413804
413720
-
Leu
TAG
[ENA]
¡û
>W1710460147
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413371
413287
-
Leu
TAG
[ENA]
¡û
>W1710460149
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413064
412980
-
Leu
TAG
[ENA]
¡û
>W1710460151
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
412745
412661
-
Leu
TAG
[ENA]
¡û
>W1710597907
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
148577
148661
+
Leu
TAG
[ENA]
¡û
>W1710744053
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41315
41399
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK