This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101439 (68 seq.)
>W1710821583
LKTP01000001
Bacteroidota
Salegentibacter mishustinae [LKTP]
277880
277796
-
Leu
TAG
[ENA]
¡û
>W1711284835
LZRO01000008
Bacteroidota
Bizionia sp. APA-3 [LZRO]
46689
46607
-
Leu
TAG
[ENA]
¡û
>W1711359995
MDJD01000043
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
39890
39972
+
Leu
TAG
[ENA]
¡û
>C171018904
CP012872
Bacteroidota
Salegentibacter sp. T436 [CP012872]
1969640
1969724
+
Leu
TAG
-
¡û
>C171059729
CP017260
Bacteroidota
Formosa sp. Hel1_33_131 [CP017260]
958714
958630
-
Leu
TAG
-
¡û
>W131225731
AUDV01000003
Bacteroidota
Gaetbulibacter saemankumensis DSM 17032 [AUDV]
930715
930799
+
Leu
TAG
[ENA]
¡û
>WENV180103953
OAPB01036760
[OAPB] marine metagenome; Sterile flask
145
227
+
Leu
TAG
[ENA]
¢þ
>WENV180114927
OAPS01074983
[OAPS] marine metagenome; sea water
292
210
-
Leu
TAG
[ENA]
¢þ
>WENV180359243
OBNR01025017
[OBNR] marine metagenome; Seawater_00002010_00002149
140
58
-
Leu
TAG
[ENA]
¢þ
>WENV180360580
OBNU01002333
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
1654
1572
-
Leu
TAG
[ENA]
¢þ
>WENV180364063
OBNZ01068934
[OBNZ] marine metagenome; ENVO:00002010
422
340
-
Leu
TAG
[ENA]
¢þ
>WENV180383352
OBOU01042389
[OBOU] marine metagenome; ENV:00002010
105
187
+
Leu
TAG
[ENA]
¢þ
>WENV181393036
OFRX01035137
[OFRX] seawater metagenome; seawater
446
528
+
Leu
TAG
[ENA]
¢þ
>WENV182558333
OJDM01000094
[OJDM] seawater metagenome; Sea water
1474
1556
+
Leu
TAG
[ENA]
¢þ
>WENV182561658
OJDX01000379
[OJDX] seawater metagenome; Sea water
4408
4326
-
Leu
TAG
[ENA]
¢þ
>WENV182564116
OJEE01000207
[OJEE] seawater metagenome; Sea water
9976
9894
-
Leu
TAG
[ENA]
¢þ
>WENV182564429
OJEF01000080
[OJEF] seawater metagenome; Sea water
13598
13516
-
Leu
TAG
[ENA]
¢þ
>WENV182565186
OJEH01000225
[OJEH] seawater metagenome; Sea water
8996
8914
-
Leu
TAG
[ENA]
¢þ
>WENV182569223
OJEY01002709
[OJEY] seawater metagenome; Sea water
900
982
+
Leu
TAG
[ENA]
¢þ
>WENV182569873
OJFB01001229
[OJFB] seawater metagenome; Sea water
3084
3166
+
Leu
TAG
[ENA]
¢þ
>WENV182574962
OJFS01011794
[OJFS] seawater metagenome; Sea water
270
352
+
Leu
TAG
[ENA]
¢þ
>WENV182576581
OJFY01000211
[OJFY] seawater metagenome; Sea water
6056
6138
+
Leu
TAG
[ENA]
¢þ
>WENV182577934
OJGM01000055
[OJGM] seawater metagenome; Sea water
16386
16304
-
Leu
TAG
[ENA]
¢þ
>WENV182578119
OJGM01002953
[OJGM] seawater metagenome; Sea water
385
303
-
Leu
TAG
[ENA]
¢þ
>WENV182579431
OJGS01009951
[OJGS] seawater metagenome; Sea water
1170
1252
+
Leu
TAG
[ENA]
¢þ
>WENV182583059
OJHD01000015
[OJHD] seawater metagenome; Sea water
22303
22385
+
Leu
TAG
[ENA]
¢þ
>WENV182583067
OJHD01000052
[OJHD] seawater metagenome; Sea water
21364
21446
+
Leu
TAG
[ENA]
¢þ
>WENV182594029
OJIV01000086
[OJIV] seawater metagenome; Sea water
14085
14003
-
Leu
TAG
[ENA]
¢þ
>WENV183054618
OLGU01000373
[OLGU] seawater metagenome; Sea water
7899
7817
-
Leu
TAG
[ENA]
¢þ
>WENV183061126
OLHZ01000006
[OLHZ] seawater metagenome; Sea water
10357
10439
+
Leu
TAG
[ENA]
¢þ
>WENV170476565
CEVI01122989
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1000
916
-
Leu
TAG
[ENA]
¢þ
>WENV170816562
MDSX01032489
[MDSX] marine metagenome; seawater
6143
6225
+
Leu
TAG
[ENA]
¢þ
>WENV170833399
MDSZ01079293
[MDSZ] marine metagenome; seawater
3444
3360
-
Leu
TAG
[ENA]
¢þ
>WENV170948867
MEHZ011298855
[MEHZ] marine metagenome; marine surface water
14
98
+
Leu
TAG
[ENA]
¢þ
>C181123913
CP025938
Bacteroidota
Tamlana carrageenivorans UJ94 [CP025938]
1850864
1850946
+
Leu
TAG
-
¡û
>C191182974
CP040812
Bacteroidota
Antarcticibacterium flavum KCTC 52984 [CP040812]
2564259
2564177
-
Leu
TAG
-
¡û
>W141821618
JQNQ01000001
Bacteroidota
Salegentibacter sp. Hel_I_6 [JQNQ]
777394
777310
-
Leu
TAG
[ENA]
¡û
>W1910569166
JJMP01000004
Bacteroidota
Allomuricauda olearia Th120 [JJMP]
228812
228894
+
Leu
TAG
[ENA]
¡û
>W1910626951
LKTR01000004
Bacteroidota
Salegentibacter salarius KCTC 12974 [LKTR]
21302
21384
+
Leu
TAG
[ENA]
¡û
>W1910627007
LKTS01000012
Bacteroidota
Salegentibacter salinarum KCTC 12975 [LKTS]
29311
29393
+
Leu
TAG
[ENA]
¡û
>W1910634567
LLKN01000001
Bacteroidota
Salegentibacter mishustinae DSM 23404 [LLKN]
277367
277285
-
Leu
TAG
[ENA]
¡û
>W1910695573
MDVN01000022
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
146264
146182
-
Leu
TAG
[ENA]
¡û
>W1910899207
NGJN01000003
Bacteroidota
Winogradskyella aurantia WNB302 [NGJN]
458386
458302
-
Leu
TAG
[ENA]
¡û
>W1810226033
POWF01000001
Bacteroidota
Hanstruepera neustonica JCM19743 [POWF]
692008
692090
+
Leu
TAG
[ENA]
¡û
>W1810356840
PVNF01000075
Bacteroidota
Salegentibacter salegens DSM 5424 [PVNF]
3899
3981
+
Leu
TAG
[ENA]
¡û
>W1810588111
QFRI01000001
Bacteroidota
Algibacter marinivivus ZY111 [QFRI]
628967
628885
-
Leu
TAG
[ENA]
¡û
>W1810596575
QGGQ01000003
Bacteroidota
Maribacter polysiphoniae DSM 23514 [QGGQ]
330321
330403
+
Leu
TAG
[ENA]
¡û
>W1810686137
QKZW01000002
Bacteroidota
Salegentibacter mishustinae DSM 23404 [QKZW]
278207
278125
-
Leu
TAG
[ENA]
¡û
>W1510013009
BBNU01000004
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
164983
165065
+
Leu
TAG
[ENA]
¡û
>W1511592678
LBIO01000042
Bacteroidota
Mangrovimonas sp. TPBH4 [LBIO]
240804
240888
+
Leu
TAG
[ENA]
¡û
>W1511592714
LBIP01000013
Bacteroidota
Mangrovimonas xylaniphaga ST2L12 [LBIP]
1016591
1016507
-
Leu
TAG
[ENA]
¡û
>C161047082
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
3096261
3096343
+
Leu
TAG
[Ensembl]
¡û
>W1610082014
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2230572
2230656
+
Leu
TAG
[ENA]
¡û
>WENV070185
AACY023800495
Marine microbial communities from Global Ocean Sampling (GOS)
730
646
-
Leu
TAG
[ENA]
>W1610685545
LKTP01000001
Bacteroidota
Salegentibacter mishustinae [LKTP]
277880
277796
-
Leu
TAG
[ENA]
¡û
>W1611042620
LZRO01000008
Bacteroidota
Bizionia sp. APA-3 [LZRO]
46689
46607
-
Leu
TAG
[ENA]
¡û
>W1710080787
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2230572
2230656
+
Leu
TAG
[ENA]
¡û
>W1710521252
FNGG01000001
Bacteroidota
Salinimicrobium catena [FNGG]
881296
881378
+
Leu
TAG
[ENA]
¡û
>W1710532561
FNQK01000024
Bacteroidota
Bizionia paragorgiae [FNQK]
11058
10974
-
Leu
TAG
[ENA]
¡û
>W1710538057
FNUG01000001
Bacteroidota
Salinimicrobium catena [FNUG]
897379
897461
+
Leu
TAG
[ENA]
¡û
>W1710543558
FOAB01000005
Bacteroidota
Aquimarina amphilecti [FOAB]
6259
6177
-
Leu
TAG
[ENA]
¡û
>W1710558026
FOLN01000003
Bacteroidota
Algibacter lectus [FOLN]
513253
513335
+
Leu
TAG
[ENA]
¡û
>W1710559029
FOMI01000001
Bacteroidota
Algibacter pectinivorans [FOMI]
299612
299528
-
Leu
TAG
[ENA]
¡û
>W1710561645
FOOH01000048
Bacteroidota
Salegentibacter agarivorans [FOOH]
4265
4349
+
Leu
TAG
[ENA]
¡û
>W1710587951
FQYY01000008
Bacteroidota
Mesonia phycicola [FQYY]
154444
154528
+
Leu
TAG
[ENA]
¡û
>W1710603337
FUYY01000008
Bacteroidota
Salegentibacter holothuriorum [FUYY]
106372
106456
+
Leu
TAG
[ENA]
¡û
>W1710603471
FUZC01000002
Bacteroidota
Salegentibacter salinarum [FUZC]
29645
29727
+
Leu
TAG
[ENA]
¡û
>W1710604617
FVZF01000010
Bacteroidota
Salegentibacter salarius [FVZF]
91783
91699
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK