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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101650 (17 seq.)
>W131104564
APCS01000003
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
6043
5959
-
Leu
TAA
[ENA]
¡û
>C007939
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
863725
863809
+
Leu
TAA
[Ensembl]
¡û
>WENV180232175
OBCO01000166
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
15650
15734
+
Leu
TAA
[ENA]
¢þ
>WENV180233210
OBCP01000212
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
15650
15734
+
Leu
TAA
[ENA]
¢þ
>WENV180569861
OCLR01000614
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
5538
5454
-
Leu
TAA
[ENA]
¢þ
>WENV180570805
OCLS01000617
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
5532
5448
-
Leu
TAA
[ENA]
¢þ
>WENV180571545
OCLT01000163
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
15650
15734
+
Leu
TAA
[ENA]
¢þ
>WENV180573768
OCLW01000157
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
15650
15734
+
Leu
TAA
[ENA]
¢þ
>WENV180639838
OCRL01000158
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
15650
15734
+
Leu
TAA
[ENA]
¢þ
>WENV180640767
OCRM01000161
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
15650
15734
+
Leu
TAA
[ENA]
¢þ
>W141154778
AXLL01000077
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
13129
13213
+
Leu
TAA
[ENA]
¡û
>C181196481
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1430134
1430050
-
Leu
TAA
-
¡û
>W141561454
JHYL01000002
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
344647
344563
-
Leu
TAA
[ENA]
¡û
>W141702067
JMLF01000010
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
108027
107943
-
Leu
TAA
[ENA]
¡û
>C10105341
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
863725
863809
+
Leu
TAA
[Ensembl]
¡û
>C11107268
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
863725
863809
+
Leu
TAA
[Ensembl]
¡û
>C161082986
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
1862518
1862434
-
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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