This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102360 (56 seq.)
>W1711117677
LUDJ01000003
Bacteroidota
Riemerella anatipestifer [LUDJ]
209562
209480
-
Leu
TAG
[ENA]
¡û
>W1711117714
LUDK01000002
Bacteroidota
Riemerella anatipestifer [LUDK]
292484
292402
-
Leu
TAG
[ENA]
¡û
>W1711117868
LUDO01000002
Bacteroidota
Riemerella anatipestifer [LUDO]
292335
292253
-
Leu
TAG
[ENA]
¡û
>W1711118009
LUDS01000002
Bacteroidota
Riemerella anatipestifer [LUDS]
112568
112650
+
Leu
TAG
[ENA]
¡û
>W1711118061
LUDT01000111
Bacteroidota
Riemerella anatipestifer [LUDT]
757
675
-
Leu
TAG
[ENA]
¡û
>W1711392035
MEND01000224
Bacteroidota
Bacteroidetes bacterium GWA2_31_9 [MEND]
901
819
-
Leu
TAG
[ENA]
¡û
>W1711392164
MENH01000092
Bacteroidota
Bacteroidetes bacterium GWA2_40_14 [MENH]
19491
19573
+
Leu
TAG
[ENA]
¡û
>W1711392435
MENO01000076
Bacteroidota
Bacteroidetes bacterium GWC2_40_13 [MENO]
19329
19411
+
Leu
TAG
[ENA]
¡û
>W1711392571
MENS01000007
Bacteroidota
Bacteroidetes bacterium GWD2_40_43 [MENS]
5773
5691
-
Leu
TAG
[ENA]
¡û
>W1711392700
MENV01000022
Bacteroidota
Bacteroidetes bacterium GWE2_32_14 [MENV]
17430
17348
-
Leu
TAG
[ENA]
¡û
>W1711392788
MENY01000011
Bacteroidota
Bacteroidetes bacterium GWE2_40_63 [MENY]
147047
147129
+
Leu
TAG
[ENA]
¡û
>W1711392948
MEOC01000005
Bacteroidota
Bacteroidetes bacterium GWE2_42_42 [MEOC]
70394
70478
+
Leu
TAG
[ENA]
¡û
>W1711393031
MEOE01000016
Bacteroidota
Bacteroidetes bacterium GWF2_33_16 [MEOE]
208227
208309
+
Leu
TAG
[ENA]
¡û
>W1711393050
MEOF01000007
Bacteroidota
Bacteroidetes bacterium GWF2_33_38 [MEOF]
9871
9953
+
Leu
TAG
[ENA]
¡û
>W1711393129
MEOH01000002
Bacteroidota
Bacteroidetes bacterium GWF2_38_335 [MEOH]
394153
394071
-
Leu
TAG
[ENA]
¡û
>W1711393192
MEOJ01000016
Bacteroidota
Bacteroidetes bacterium GWF2_40_13 [MEOJ]
147026
147108
+
Leu
TAG
[ENA]
¡û
>W1711393585
MEPD01000032
Bacteroidota
Bacteroidetes bacterium RIFOXYA12_FULL_33_9 [MEPD]
9447
9365
-
Leu
TAG
[ENA]
¡û
>W1711393653
MEPF01000028
Bacteroidota
Bacteroidetes bacterium RIFOXYA12_FULL_38_20 [MEPF]
23868
23950
+
Leu
TAG
[ENA]
¡û
>W1711393710
MEPH01000226
Bacteroidota
Bacteroidetes bacterium RIFOXYA2_FULL_33_7 [MEPH]
288
206
-
Leu
TAG
[ENA]
¡û
>W1711393848
MEPN01000019
Bacteroidota
Bacteroidetes bacterium RIFOXYC2_FULL_40_12 [MEPN]
5507
5425
-
Leu
TAG
[ENA]
¡û
>WENV180089845
MPMF02107183
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
705
787
+
Leu
TAG
[ENA]
¢þ
>WENV181172295
OEIV010588597
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
73
157
+
Leu
TAG
[ENA]
¢þ
>WENV183706231
PDWI01003530
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4650
4732
+
Leu
TAG
[ENA]
¢þ
>WENV183712365
PDWI01097499
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1059
977
-
Leu
TAG
[ENA]
¢þ
>WENV183712929
PDWI01119243
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
92
10
-
Leu
TAG
[ENA]
¢þ
>WENV183713429
PDWI01138102
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
745
663
-
Leu
TAG
[ENA]
¢þ
>WENV183713583
PDWI01143641
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1168
1250
+
Leu
TAG
[ENA]
¢þ
>WENV183714532
PDWI01189185
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1369
1287
-
Leu
TAG
[ENA]
¢þ
>WENV183794162
PVBE010074929
[PVBE] marine metagenome; water
6977
6895
-
Leu
TAG
[ENA]
¢þ
>WENV170006048
AMQJ01017675
[AMQJ] sediment metagenome; subsurface aquifer sediment
1585
1503
-
Leu
TAG
[ENA]
¢þ
>WENV170571724
FLOH01000279
[FLOH] marine metagenome; water
9596
9514
-
Leu
TAG
[ENA]
¢þ
>WENV170643320
JFJP01053082
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1498
1580
+
Leu
TAG
[ENA]
¢þ
>WENV170647274
JQIA01018280
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1140
1222
+
Leu
TAG
[ENA]
¢þ
>WENV170677510
LDZT01006154
[LDZT] terrestrial metagenome; oil reservoir sample SB1
12142
12224
+
Leu
TAG
[ENA]
¢þ
>WENV170699721
LGVF01636287
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
199
281
+
Leu
TAG
[ENA]
¢þ
>C181004336
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
1735601
1735683
+
Leu
TAG
-
¡û
>C191185714
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
1502488
1502570
+
Leu
TAG
-
¡û
>W1911615638
PPEC01000002
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
228302
228220
-
Leu
TAG
[ENA]
¡û
>W1810191537
PKKR01000002
Bacteroidota
Riemerella anatipestifer 17CS0503 [PKKR]
114862
114944
+
Leu
TAG
[ENA]
¡û
>W1810587851
QFLI01000005
Bacteroidota
Marinifilum breve JC075 [QFLI]
246253
246335
+
Leu
TAG
[ENA]
¡û
>C151025728
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
1408997
1409079
+
Leu
TAG
[Ensembl]
¡û
>C151025768
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
1422109
1422191
+
Leu
TAG
[Ensembl]
¡û
>C11118504
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
898781
898699
-
Leu
TAG
[Ensembl]
¡û
>W1511584129
LAVB01000010
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
58129
58211
+
Leu
TAG
[ENA]
¡û
>C121012020
CP003388
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP003388]
1580983
1581065
+
Leu
TAG
-
¡û
>W1610043606
BAZX01000004
Bacteroidota
Marinifilum fragile JCM 15579 [BAZX]
164237
164153
-
Leu
TAG
[ENA]
¡û
>C131006690
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
629396
629314
-
Leu
TAG
[Ensembl]
¡û
>C131011633
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
308648
308566
-
Leu
TAG
[Ensembl]
¡û
>W1610613646
LGGC01000007
Bacteroidota
Bacteroidetes bacterium 38_7 [LGGC]
12142
12224
+
Leu
TAG
[ENA]
¡û
>W1610929036
LUDJ01000003
Bacteroidota
Riemerella anatipestifer [LUDJ]
209562
209480
-
Leu
TAG
[ENA]
¡û
>W1610929073
LUDK01000002
Bacteroidota
Riemerella anatipestifer [LUDK]
292484
292402
-
Leu
TAG
[ENA]
¡û
>W1610929227
LUDO01000002
Bacteroidota
Riemerella anatipestifer [LUDO]
292335
292253
-
Leu
TAG
[ENA]
¡û
>W1610929368
LUDS01000002
Bacteroidota
Riemerella anatipestifer [LUDS]
112568
112650
+
Leu
TAG
[ENA]
¡û
>W1610929420
LUDT01000111
Bacteroidota
Riemerella anatipestifer [LUDT]
757
675
-
Leu
TAG
[ENA]
¡û
>W1710040766
BAZX01000004
Bacteroidota
Marinifilum fragile JCM 15579 [BAZX]
164237
164153
-
Leu
TAG
[ENA]
¡û
>W1710734818
LGGC01000007
Bacteroidota
Bacteroidetes bacterium 38_7 [LGGC]
12142
12224
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK