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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102490 (57 seq.)
>W1710932004
LOHU01000072
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
118312
118397
+
Leu
CAA
[ENA]
¡û
>C171092095
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
1206874
1206959
+
Leu
CAA
-
¡û
>w023708
AAYC01000002
Alphaproteobacteria
Roseobacter sp. SK209-2-6 [AAYC]
290771
290684
-
Leu
CAA
[ENA]
¡û
>WENV180364836
OBOA01145172
[OBOA] marine metagenome; Deep Chlorophyll Maximum
91
6
-
Leu
CAA
[ENA]
¢þ
>W141151415
AXBB01000001
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
832806
832891
+
Leu
CAA
[ENA]
¡û
>WENV183704887
PDWI01000731
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4556
4471
-
Leu
CAA
[ENA]
¢þ
>WENV170646329
JQGR01000014
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
22876
22961
+
Leu
CAA
[ENA]
¢þ
>C181008427
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
1746492
1746577
+
Leu
CAA
-
¡û
>C181008509
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
1706430
1706345
-
Leu
CAA
-
¡û
>C181008541
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
1647998
1648083
+
Leu
CAA
-
¡û
>C181008623
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
1732545
1732460
-
Leu
CAA
-
¡û
>C181008737
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
1717941
1717856
-
Leu
CAA
-
¡û
>C181008772
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
1693889
1693974
+
Leu
CAA
-
¡û
>C181008850
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
2159256
2159171
-
Leu
CAA
-
¡û
>C181008910
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
1657510
1657425
-
Leu
CAA
-
¡û
>C181008967
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
1696380
1696295
-
Leu
CAA
-
¡û
>C181009000
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
1482011
1482096
+
Leu
CAA
-
¡û
>C181009081
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
1734221
1734136
-
Leu
CAA
-
¡û
>C181009138
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
1713759
1713674
-
Leu
CAA
-
¡û
>C181009172
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
1780744
1780829
+
Leu
CAA
-
¡û
>C181009310
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
1657510
1657425
-
Leu
CAA
-
¡û
>C181009367
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
1738435
1738350
-
Leu
CAA
-
¡û
>C181009401
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
1674982
1675067
+
Leu
CAA
-
¡û
>C181009540
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
1770172
1770087
-
Leu
CAA
-
¡û
>C181009596
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
1758847
1758762
-
Leu
CAA
-
¡û
>C181009653
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
1764891
1764806
-
Leu
CAA
-
¡û
>C181009710
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
1758506
1758421
-
Leu
CAA
-
¡û
>C181009767
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
1732544
1732459
-
Leu
CAA
-
¡û
>C181009800
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
1647998
1648083
+
Leu
CAA
-
¡û
>C181009882
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
1622398
1622313
-
Leu
CAA
-
¡û
>C181009916
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
1745326
1745411
+
Leu
CAA
-
¡û
>C181009997
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
1657510
1657425
-
Leu
CAA
-
¡û
>C181048976
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
1736561
1736646
+
Leu
CAA
-
¡û
>C191020022
CP022303
Alphaproteobacteria
Thalassococcus sp. S3 [CP022303]
2089564
2089649
+
Leu
CAA
-
¡û
>C191083167
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
1696146
1696061
-
Leu
CAA
-
¡û
>C191083223
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
1782407
1782322
-
Leu
CAA
-
¡û
>C191083281
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
848179
848094
-
Leu
CAA
-
¡û
>W1910443259
FWFX01000014
Alphaproteobacteria
Roseovarius albus CECT 7450 [FWFX]
82491
82406
-
Leu
CAA
[ENA]
¡û
>C141011179
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
1748918
1749003
+
Leu
CAA
[Ensembl]
¡û
>W1510000325
AQQZ01000007
Alphaproteobacteria
Pseudaestuariivita atlantica 22II-S11-z3 [AQQZ]
90014
90099
+
Leu
CAA
[ENA]
¡û
>W1511388750
JSWJ01000003
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
498691
498606
-
Leu
CAA
[ENA]
¡û
>W1511483014
JWLL01000006
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
778443
778358
-
Leu
CAA
[ENA]
¡û
>C121003812
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
1782345
1782260
-
Leu
CAA
[Ensembl]
¡û
>C121003870
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
1696151
1696066
-
Leu
CAA
-
¡û
>W1610016139
AOQA01000005
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
344546
344631
+
Leu
CAA
[ENA]
¡û
>W1610092762
CYSB01000025
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSB]
201684
201769
+
Leu
CAA
[ENA]
¡û
>W1610092799
CYSC01000007
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSC]
201880
201965
+
Leu
CAA
[ENA]
¡û
>W1610092946
CYSF01000005
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [CYSF]
50712
50797
+
Leu
CAA
[ENA]
¡û
>W1610789473
LOHU01000072
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
118312
118397
+
Leu
CAA
[ENA]
¡û
>W1710013030
AOQA01000005
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
344546
344631
+
Leu
CAA
[ENA]
¡û
>W1710015371
AQQP01000015
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
18846
18761
-
Leu
CAA
[ENA]
¡û
>W1710096017
CYSB01000025
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSB]
201684
201769
+
Leu
CAA
[ENA]
¡û
>W1710096054
CYSC01000007
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSC]
201880
201965
+
Leu
CAA
[ENA]
¡û
>W1710096201
CYSF01000005
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [CYSF]
50712
50797
+
Leu
CAA
[ENA]
¡û
>W1710568487
FOTQ01000005
Alphaproteobacteria
Shimia aestuarii [FOTQ]
135782
135697
-
Leu
CAA
[ENA]
¡û
>W1710574564
FOYI01000006
Alphaproteobacteria
Poseidonocella sedimentorum [FOYI]
160258
160343
+
Leu
CAA
[ENA]
¡û
>W1710598330
FTNX01000013
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [FTNX]
50248
50333
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK