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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.103045 (18 seq.)
>W1711185905
LWNU01000007
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
221406
221491
+
Tyr
GTA
[ENA]
¡û
>W1711510283
MLAL01000045
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
205396
205311
-
Tyr
GTA
[ENA]
¡û
>W1711511714
MLCQ01000029
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
320623
320538
-
Tyr
GTA
[ENA]
¡û
>W1711511726
MLCR01000006
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
226807
226722
-
Tyr
GTA
[ENA]
¡û
>C171001816
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
456911
456996
+
Tyr
GTA
-
¡û
>C171002122
CP009251
Actinomycetota
Corynebacterium stationis 622 [CP009251]
452303
452388
+
Tyr
GTA
-
¡û
>C171064735
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1984348
1984263
-
Tyr
GTA
-
¡û
>C171101828
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
323024
323109
+
Tyr
GTA
-
¡û
>WENV182629214
OJKR01031822
[OJKR] metagenome; surface
365
449
+
Tyr
GTA
[ENA]
¢þ
>WENV182636163
OJKZ01000653
[OJKZ] metagenome; surface
327
243
-
Tyr
GTA
[ENA]
¢þ
>WENV182643966
OJLW01003974
[OJLW] metagenome; surface
2584
2668
+
Tyr
GTA
[ENA]
¢þ
>WENV182644938
OJLY01000937
[OJLY] metagenome; surface
327
243
-
Tyr
GTA
[ENA]
¢þ
>WENV182671801
OJNM01003169
[OJNM] metagenome; surface
3532
3616
+
Tyr
GTA
[ENA]
¢þ
>W1910225855
FMSX01000019
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
94779
94863
+
Tyr
GTA
[ENA]
¡û
>W1810326700
PUGE01000001
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
497976
497891
-
Tyr
GTA
[ENA]
¡û
>C151005920
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
522202
522287
+
Tyr
GTA
[Ensembl]
¡û
>C161070410
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
500348
500433
+
Tyr
GTA
[Ensembl]
¡û
>W121127413
CAFW01000086
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
19851
19936
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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