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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10353 (20 seq.)
>C171130498
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
247895
247988
+
Ser
GCT
-
¡û
>WENV180022344
FTFY01001154
[FTFY] metagenome; soil
16666
16573
-
Ser
GCT
[ENA]
¡û
>WENV180029745
FTJL01003090
[FTJL] metagenome; soil
1110
1203
+
Ser
GCT
[ENA]
¡û
>W1810400001
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1700128
1700035
-
Ser
GCT
[ENA]
¡û
>C151062597
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
2572894
2572987
+
Ser
GCT
[Ensembl]
¡û
>W2010534886
JAAOZT010000002
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JAAOZT]
108851
108944
+
Ser
GCT
[ENA]
¡û
>W2010702810
JACHHQ010000001
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JACHHQ]
108087
108180
+
Ser
GCT
[ENA]
¡û
>W2011353307
RAIL01000001
Betaproteobacteria
Collimonas fungivorans ES_Al-A1 [RAIL]
2686539
2686632
+
Ser
GCT
[ENA]
¡û
>W2012047538
VIVV01000002
Betaproteobacteria
Collimonas arenae 515 [VIVV]
16367
16274
-
Ser
GCT
[ENA]
¡û
>W2012509416
WXXL01000018
Betaproteobacteria
PMB3(1) [WXXL]
195669
195762
+
Ser
GCT
[ENA]
¡û
>W2110566765
JAGQED010000001
Betaproteobacteria
Collimonas antrihumi DSM 104040 [JAGQED]
558742
558835
+
Ser
GCT
[ENA]
¡û
>C211274255
CP070304
Betaproteobacteria
Glaciimonas sp. PAMC28666 [CP070304]
295540
295447
-
Ser
GCT
-
¡û
>C11105096
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
2785026
2784933
-
Ser
GCT
[Ensembl]
¡û
>C161053617
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3253622
3253529
-
Ser
GCT
[Ensembl]
¡û
>C161053711
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
3136614
3136521
-
Ser
GCT
[Ensembl]
¡û
>C161053785
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
2461086
2461179
+
Ser
GCT
[Ensembl]
¡û
>W1710530379
FNOR01000022
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
60348
60441
+
Ser
GCT
[ENA]
¡û
>W1710556452
FOKF01000018
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
90114
90207
+
Ser
GCT
[ENA]
¡û
>W1710557525
FOLC01000003
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
22869
22776
-
Ser
GCT
[ENA]
¡û
>W1710564210
FOQI01000001
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
363954
363861
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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