This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.104003 (131 seq.)
>W1710876347
LMPD01000003
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
335190
335106
-
Leu
TAG
[ENA]
¡û
>W1710876598
LMPJ01000001
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
1071311
1071229
-
Leu
TAG
[ENA]
¡û
>W1711072021
LSHB01000075
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
599
515
-
Leu
TAG
[ENA]
¡û
>W131220943
AUAA01000002
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
194364
194448
+
Leu
TAG
[ENA]
¡û
>W131145026
AQFV01000008
Bacteroidota
Parabacteroides sp. ASF519 [AQFV]
63282
63198
-
Leu
TAG
[ENA]
¡û
>W131221088
AUAE01000007
Bacteroidota
Parabacteroides gordonii DSM 23371 [AUAE]
230228
230312
+
Leu
TAG
[ENA]
¡û
>W141008351
AGZO01000009
Bacteroidota
Parabacteroides goldsteinii CL02T12C30 [AGZO]
4998
4914
-
Leu
TAG
[ENA]
¡û
>WENV180132380
OATI01000040
[OATI] human gut metagenome; faeces
87400
87318
-
Leu
TAG
[ENA]
¢þ
>WENV180172063
OAVX01000225
[OAVX] human gut metagenome; faeces
5706
5788
+
Leu
TAG
[ENA]
¢þ
>WENV180223734
OBBH01009611
[OBBH] human gut metagenome; human gut
36
118
+
Leu
TAG
[ENA]
¢þ
>WENV180240304
OBDC01008673
[OBDC] human gut metagenome; human gut
1005
923
-
Leu
TAG
[ENA]
¢þ
>WENV180246643
OBDP01023817
[OBDP] human gut metagenome; human gut
61
143
+
Leu
TAG
[ENA]
¢þ
>WENV180338699
OBLI01000856
[OBLI] pig gut metagenome; faeces
22601
22683
+
Leu
TAG
[ENA]
¢þ
>WENV180470378
OBYN01000222
[OBYN] human gut metagenome; faeces
9915
9833
-
Leu
TAG
[ENA]
¢þ
>WENV180475385
OBYU01017518
[OBYU] human gut metagenome; faeces
46
128
+
Leu
TAG
[ENA]
¢þ
>WENV180501023
OCAK01000054
[OCAK] human gut metagenome; faeces
50928
50846
-
Leu
TAG
[ENA]
¢þ
>WENV180544144
OCIP01004725
[OCIP] human gut metagenome; human gut
365
447
+
Leu
TAG
[ENA]
¢þ
>WENV180849663
ODKV01000855
[ODKV] human metagenome; G_DNA_Stool
1733
1815
+
Leu
TAG
[ENA]
¢þ
>WENV181046835
ODXX01009509
[ODXX] human metagenome; G_DNA_Buccal mucosa
515
597
+
Leu
TAG
[ENA]
¢þ
>WENV181195890
OEQV01000983
[OEQV] metagenome; water of meat washing
1646
1564
-
Leu
TAG
[ENA]
¢þ
>WENV181238738
OFFC01002654
[OFFC] mouse gut metagenome; faeces
4869
4951
+
Leu
TAG
[ENA]
¢þ
>WENV181240628
OFFE01003441
[OFFE] mouse gut metagenome; faeces
4870
4952
+
Leu
TAG
[ENA]
¢þ
>WENV181242682
OFFG01001423
[OFFG] mouse gut metagenome; faeces
9349
9267
-
Leu
TAG
[ENA]
¢þ
>WENV181245059
OFFI01010410
[OFFI] mouse gut metagenome; faeces
879
961
+
Leu
TAG
[ENA]
¢þ
>WENV181245633
OFFJ01000696
[OFFJ] mouse gut metagenome; faeces
4883
4965
+
Leu
TAG
[ENA]
¢þ
>WENV181261487
OFFX01059845
[OFFX] mouse gut metagenome; faeces
38
120
+
Leu
TAG
[ENA]
¢þ
>WENV181268302
OFGD01002722
[OFGD] mouse gut metagenome; faeces
2549
2467
-
Leu
TAG
[ENA]
¢þ
>WENV181281148
OFGO01012885
[OFGO] mouse gut metagenome; faeces
1702
1620
-
Leu
TAG
[ENA]
¢þ
>WENV181301076
OFHN01030070
[OFHN] mouse gut metagenome; faeces
537
455
-
Leu
TAG
[ENA]
¢þ
>WENV181302476
OFHO01028976
[OFHO] mouse gut metagenome; faeces
1439
1357
-
Leu
TAG
[ENA]
¢þ
>WENV181429280
OGCX01000835
[OGCX] metagenome; Human gut stool
10823
10741
-
Leu
TAG
[ENA]
¢þ
>WENV181452000
OGDY01048779
[OGDY] metagenome; Human gut stool
211
129
-
Leu
TAG
[ENA]
¢þ
>WENV181457457
OGEI01000682
[OGEI] metagenome; Human gut stool
14778
14696
-
Leu
TAG
[ENA]
¢þ
>WENV181461513
OGEN01000001
[OGEN] metagenome; Human gut stool
106646
106728
+
Leu
TAG
[ENA]
¢þ
>WENV181473795
OGFC01000259
[OGFC] metagenome; Human gut stool
41207
41125
-
Leu
TAG
[ENA]
¢þ
>WENV181542528
OGIE01001965
[OGIE] metagenome; Human gut stool
25228
25310
+
Leu
TAG
[ENA]
¢þ
>WENV181575363
OGJU01001603
[OGJU] metagenome; Human gut stool
4236
4318
+
Leu
TAG
[ENA]
¢þ
>WENV181664353
OGOI01002284
[OGOI] human gut metagenome; faeces
8
90
+
Leu
TAG
[ENA]
¢þ
>WENV181682350
OGOU01006561
[OGOU] human gut metagenome; faeces
52
134
+
Leu
TAG
[ENA]
¢þ
>WENV181692321
OGPA01000027
[OGPA] human gut metagenome; faeces
127873
127955
+
Leu
TAG
[ENA]
¢þ
>WENV181703141
OGPJ01003469
[OGPJ] human gut metagenome; faeces
5694
5776
+
Leu
TAG
[ENA]
¢þ
>WENV181734073
OGQF01000051
[OGQF] human gut metagenome; faeces
5058
5140
+
Leu
TAG
[ENA]
¢þ
>WENV181795472
OGRT01000203
[OGRT] human gut metagenome; faeces
27338
27420
+
Leu
TAG
[ENA]
¢þ
>WENV181824170
OGUK01000287
[OGUK] human gut metagenome; faeces
18086
18004
-
Leu
TAG
[ENA]
¢þ
>WENV181897370
OGXT01000102
[OGXT] human gut metagenome; faeces
71233
71151
-
Leu
TAG
[ENA]
¢þ
>WENV181938655
OGYW01024169
[OGYW] human gut metagenome; faeces
67
149
+
Leu
TAG
[ENA]
¢þ
>WENV181944448
OGZA01002986
[OGZA] human gut metagenome; faeces
9253
9171
-
Leu
TAG
[ENA]
¢þ
>WENV181970053
OGZX01001666
[OGZX] human gut metagenome; faeces
12707
12789
+
Leu
TAG
[ENA]
¢þ
>WENV181970329
OGZX01005779
[OGZX] human gut metagenome; faeces
1398
1480
+
Leu
TAG
[ENA]
¢þ
>WENV182041549
OHDI01007019
[OHDI] human gut metagenome; feces
110
28
-
Leu
TAG
[ENA]
¢þ
>WENV182143548
OHKV01003576
[OHKV] human gut metagenome; feces
3440
3358
-
Leu
TAG
[ENA]
¢þ
>WENV182172673
OHMY01030703
[OHMY] human gut metagenome; feces
543
461
-
Leu
TAG
[ENA]
¢þ
>WENV182174093
OHNE01007842
[OHNE] human gut metagenome; feces
451
533
+
Leu
TAG
[ENA]
¢þ
>WENV182212510
OHQG01001053
[OHQG] human gut metagenome; feces
4660
4578
-
Leu
TAG
[ENA]
¢þ
>WENV182215697
OHQM01001381
[OHQM] human gut metagenome; feces
1083
1001
-
Leu
TAG
[ENA]
¢þ
>WENV182523306
OIWS01007066
[OIWS] human gut metagenome; faeces
1421
1339
-
Leu
TAG
[ENA]
¢þ
>WENV182695156
OJOI01043890
[OJOI] human gut metagenome; human gut
569
651
+
Leu
TAG
[ENA]
¢þ
>WENV182783245
OJSF01033660
[OJSF] human gut metagenome; human gut
309
391
+
Leu
TAG
[ENA]
¢þ
>WENV182785345
OJSH01023893
[OJSH] human gut metagenome; human gut
513
595
+
Leu
TAG
[ENA]
¢þ
>WENV183038189
OLGB01000188
[OLGB] human gut metagenome; faeces
57712
57630
-
Leu
TAG
[ENA]
¢þ
>WENV183040927
OLGD01000229
[OLGD] human gut metagenome; faeces
58700
58782
+
Leu
TAG
[ENA]
¢þ
>WENV183071963
OLIT01000034
[OLIT] human gut metagenome; feces
111389
111307
-
Leu
TAG
[ENA]
¢þ
>WENV183145217
OLOL01054273
[OLOL] human gut metagenome; faeces
402
484
+
Leu
TAG
[ENA]
¢þ
>WENV183330344
OLWB01005675
[OLWB] human gut metagenome; faeces
4955
5037
+
Leu
TAG
[ENA]
¢þ
>WENV183391062
OLZC01020564
[OLZC] human gut metagenome; feces
159
241
+
Leu
TAG
[ENA]
¢þ
>WENV183495474
OMGL01002119
[OMGL] human gut metagenome; human gut
10627
10709
+
Leu
TAG
[ENA]
¢þ
>WENV183498201
OMGO01001193
[OMGO] human gut metagenome; human gut
1637
1719
+
Leu
TAG
[ENA]
¢þ
>WENV183500732
OMGR01000181
[OMGR] human gut metagenome; human gut
23896
23978
+
Leu
TAG
[ENA]
¢þ
>WENV183564611
OOBZ01000034
[OOBZ] human gut metagenome; human gut
46618
46536
-
Leu
TAG
[ENA]
¢þ
>WENV183587509
OOCU01000271
[OOCU] human gut metagenome; human gut
5277
5195
-
Leu
TAG
[ENA]
¢þ
>WENV183649142
OQVS01118334
[OQVS] human gut metagenome; human gut
186
104
-
Leu
TAG
[ENA]
¢þ
>WENV183753943
PPYE01075638
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
985
903
-
Leu
TAG
[ENA]
¢þ
>WENV170559888
CXWL01167609
[CXWL] groundwater metagenome; biofilm material
304
220
-
Leu
TAG
[ENA]
¢þ
>C191115476
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
1455391
1455473
+
Leu
TAG
-
¡û
>C191115576
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
4931206
4931288
+
Leu
TAG
-
¡û
>C191120527
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
422176
422094
-
Leu
TAG
-
¡û
>C191120537
CP034161
Bacteroidota
Epilithonimonas vandammei F5649 [CP034161]
106293
106375
+
Leu
TAG
-
¡û
>C191212977
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
2075467
2075549
+
Leu
TAG
-
¡û
>W141727627
JNFF01000033
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
105209
105127
-
Leu
TAG
[ENA]
¡û
>W141806151
JPLY01000001
Bacteroidota
Epilithonimonas lactis [JPLY]
369226
369142
-
Leu
TAG
[ENA]
¡û
>W141806193
JPLZ01000001
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
175946
175862
-
Leu
TAG
[ENA]
¡û
>W141809213
JPRI01000001
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
812871
812955
+
Leu
TAG
[ENA]
¡û
>W141815921
JQJM01000012
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
91646
91562
-
Leu
TAG
[ENA]
¡û
>W1910371931
FUFV01000013
Bacteroidota
Parabacteroides sp. Marseille-P3160 [FUFV]
44439
44521
+
Leu
TAG
[ENA]
¡û
>W1910503422
FYCK01000009
Bacteroidota
Parabacteroides bouchesdurhonensis Marseille-P3763 [FYCK]
125805
125887
+
Leu
TAG
[ENA]
¡û
>W1911218480
NRQT01000007
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
106997
106915
-
Leu
TAG
[ENA]
¡û
>W1911498365
OCTR01000001
Bacteroidota
Parabacteroides provencensis Marseille-P3668 [OCTR]
1480597
1480515
-
Leu
TAG
[ENA]
¡û
>W1911586384
PIZV01000026
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
109703
109785
+
Leu
TAG
[ENA]
¡û
>W1911701318
QNUG01000012
Bacteroidota
Epilithonimonas hispanica KCTC 22104 [QNUG]
95895
95977
+
Leu
TAG
[ENA]
¡û
>W1911728492
QTMM01000002
Bacteroidota
Parabacteroides sp. AF17-3 [QTMM]
486155
486073
-
Leu
TAG
[ENA]
¡û
>W1810606116
QGNY01000004
Bacteroidota
Pedobacter paludis R-8 [QGNY]
47087
47005
-
Leu
TAG
[ENA]
¡û
>W1810606137
QGNZ01000001
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
272416
272498
+
Leu
TAG
[ENA]
¡û
>W1810693917
QLLR01000051
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
15157
15239
+
Leu
TAG
[ENA]
¡û
>W1810797913
QRMU01000006
Bacteroidota
Bacteroides sp. AM07-16 [QRMU]
98941
98859
-
Leu
TAG
[ENA]
¡û
>W1810818976
QSDP01000065
Bacteroidota
Parabacteroides sp. AM58-2XD [QSDP]
32288
32370
+
Leu
TAG
[ENA]
¡û
>W1810876443
QUGR01000016
Bacteroidota
Parabacteroides sp. AF18-52 [QUGR]
4533
4451
-
Leu
TAG
[ENA]
¡û
>W1810877229
QUHH01000007
Bacteroidota
Parabacteroides sp. AF14-59 [QUHH]
158369
158287
-
Leu
TAG
[ENA]
¡û
>W1810881247
QUKD01000006
Bacteroidota
Parabacteroides sp. TM07-1AC [QUKD]
244624
244706
+
Leu
TAG
[ENA]
¡û
>W1810885604
QUNL01000012
Bacteroidota
Pedobacter sp. OV280 [QUNL]
126778
126696
-
Leu
TAG
[ENA]
¡û
>W1510015894
BBRT01000144
Bacteroidota
Candidatus Symbiothrix dinenymphae dinenymphae B4-10h [BBRT]
8117
8201
+
Leu
TAG
[ENA]
¡û
>W1510015914
BBRU01000157
Bacteroidota
Candidatus Symbiothrix dinenymphae dinenymphae C5-4h [BBRU]
3443
3527
+
Leu
TAG
[ENA]
¡û
>W1510015932
BBRV01000686
Bacteroidota
Candidatus Symbiothrix dinenymphae dinenymphae C9-6h [BBRV]
332
416
+
Leu
TAG
[ENA]
¡û
>W1511390873
JSYL01000002
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
626492
626576
+
Leu
TAG
[ENA]
¡û
>W1511509401
JXRA01000006
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
20108
20024
-
Leu
TAG
[ENA]
¡û
>W1511682198
LFJV01000006
Bacteroidota
Parabacteroides goldsteinii 910340 [LFJV]
63847
63931
+
Leu
TAG
[ENA]
¡û
>C161072997
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
272075
272159
+
Leu
TAG
[Ensembl]
¡û
>W1610004018
AGES01000009
Bacteroidota
Parabacteroides sp. HGS0025 [AGES]
1128999
1129083
+
Leu
TAG
[ENA]
¡û
>W1610018384
AQHW01000013
Bacteroidota
Parabacteroides gordonii MS-1 [AQHW]
152566
152650
+
Leu
TAG
[ENA]
¡û
>W1610580609
LBCW01000157
Bacteroidota
Bacteroidales bacterium Barb6XT [LBCW]
2965
3047
+
Leu
TAG
[ENA]
¡û
>W1610580660
LBCX01000318
Bacteroidota
Bacteroidales bacterium Barb4 [LBCX]
878
960
+
Leu
TAG
[ENA]
¡û
>W1610738693
LMPD01000003
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
335190
335106
-
Leu
TAG
[ENA]
¡û
>W1610738944
LMPJ01000001
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
1071311
1071229
-
Leu
TAG
[ENA]
¡û
>W1610911281
LSHB01000075
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
599
515
-
Leu
TAG
[ENA]
¡û
>WENV084936
BABA01034084
Gut microbiome of Human (healthy human sample F2-Y, Child, Female)
772
856
+
Leu
TAG
[ENA]
>W1710004527
AGES01000009
Bacteroidota
Parabacteroides sp. HGS0025 [AGES]
1128999
1129083
+
Leu
TAG
[ENA]
¡û
>W1710015294
AQHW01000013
Bacteroidota
Parabacteroides gordonii MS-1 [AQHW]
152566
152650
+
Leu
TAG
[ENA]
¡û
>W1710518799
FNEG01000002
Bacteroidota
Chryseobacterium jejuense [FNEG]
694387
694471
+
Leu
TAG
[ENA]
¡û
>W1710522564
FNHH01000002
Bacteroidota
Daejeonella rubra ruber [FNHH]
236530
236612
+
Leu
TAG
[ENA]
¡û
>W1710533311
FNRA01000010
Bacteroidota
Pedobacter hartonius [FNRA]
40694
40612
-
Leu
TAG
[ENA]
¡û
>W1710538655
FNUS01000003
Bacteroidota
Halpernia humi [FNUS]
180003
179919
-
Leu
TAG
[ENA]
¡û
>W1710539826
FNVS01000008
Bacteroidota
Parabacteroides chinchillae [FNVS]
25361
25443
+
Leu
TAG
[ENA]
¡û
>W1710540577
FNWX01000043
Bacteroidota
Epilithonimonas hominis [FNWX]
1349
1433
+
Leu
TAG
[ENA]
¡û
>W1710550500
FOFI01000002
Bacteroidota
Epilithonimonas lactis [FOFI]
222099
222015
-
Leu
TAG
[ENA]
¡û
>W1710557436
FOLA01000002
Bacteroidota
Kaistella jeonii [FOLA]
180871
180787
-
Leu
TAG
[ENA]
¡û
>W1710591973
FRCD01000001
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
241696
241778
+
Leu
TAG
[ENA]
¡û
>W1710594733
FSRK01000002
Bacteroidota
Epilithonimonas zeae [FSRK]
718793
718877
+
Leu
TAG
[ENA]
¡û
>W1710598916
FTOI01000005
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
67010
67094
+
Leu
TAG
[ENA]
¡û
>W1710602995
FUYR01000006
Bacteroidota
Daejeonella lutea luteus [FUYR]
76389
76307
-
Leu
TAG
[ENA]
¡û
>W1710603352
FUYZ01000003
Bacteroidota
Soonwooa buanensis [FUYZ]
288597
288681
+
Leu
TAG
[ENA]
¡û
>W1710699621
LBCW01000157
Bacteroidota
Bacteroidales bacterium Barb6XT [LBCW]
2965
3047
+
Leu
TAG
[ENA]
¡û
>W1710699672
LBCX01000318
Bacteroidota
Bacteroidales bacterium Barb4 [LBCX]
878
960
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK