This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105095 (82 seq.)
>W1710869775
LMJZ01000013
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
17742
17826
+
Leu
TAG
[ENA]
¡û
>W1710870004
LMKE01000001
Alphaproteobacteria
Sphingomonas sp. Leaf10 [LMKE]
391842
391926
+
Leu
TAG
[ENA]
¡û
>W1710870554
LMKP01000034
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
41733
41817
+
Leu
TAG
[ENA]
¡û
>W1710870685
LMKS01000010
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
17751
17835
+
Leu
TAG
[ENA]
¡û
>W1710871854
LMLN01000028
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
525043
525127
+
Leu
TAG
[ENA]
¡û
>W1710871928
LMLP01000001
Alphaproteobacteria
Sphingomonas sp. Leaf67 [LMLP]
172705
172621
-
Leu
TAG
[ENA]
¡û
>W1711069398
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
401615
401699
+
Leu
TAG
[ENA]
¡û
>C171115167
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
296247
296163
-
Leu
TAG
-
¡û
>W131098378
AORL01000021
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
705455
705371
-
Leu
TAG
[ENA]
¡û
>W131046806
AMSR01000006
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
401372
401456
+
Leu
TAG
[ENA]
¡û
>C027923
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
963135
963219
+
Leu
TAG
[Ensembl]
¡û
>WENV180020637
FTCZ01007753
[FTCZ] metagenome; soil
87
3
-
Leu
TAG
[ENA]
¡û
>WENV180028170
FTJA01001366
[FTJA] metagenome; soil
375
291
-
Leu
TAG
[ENA]
¡û
>WENV180692370
OCZS010490238
[OCZS] soil metagenome; soil
281
365
+
Leu
TAG
[ENA]
¡û
>WENV181192691
OEPS010929892
[OEPS] soil metagenome; soil
124
40
-
Leu
TAG
[ENA]
¡û
>WENV183730377
PJTS01000001
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
652284
652200
-
Leu
TAG
[ENA]
¡û
>WENV183731493
PJTT01000009
[PJTT] soil metagenome; Soil (2) enriched on wood chips
205259
205343
+
Leu
TAG
[ENA]
¡û
>W141452309
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1640652
1640736
+
Leu
TAG
[ENA]
¡û
>C181088859
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
965505
965589
+
Leu
TAG
-
¡û
>C181088910
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
965505
965589
+
Leu
TAG
-
¡û
>C181089237
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
965505
965589
+
Leu
TAG
-
¡û
>C191145584
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
963104
963188
+
Leu
TAG
-
¡û
>C191145635
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
963104
963188
+
Leu
TAG
-
¡û
>C191145686
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
963104
963188
+
Leu
TAG
-
¡û
>W09133965
ACQU01000004
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
84650
84566
-
Leu
TAG
[ENA]
¡û
>W141779123
JONN01000002
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
362691
362775
+
Leu
TAG
[ENA]
¡û
>W1910182415
BJMW01000007
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
104958
105042
+
Leu
TAG
[ENA]
¡û
>W1910182452
BJMX01000001
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
44582
44498
-
Leu
TAG
[ENA]
¡û
>C141008824
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
411394
411310
-
Leu
TAG
[Ensembl]
¡û
>W1910822137
MWMO01000001
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
728716
728800
+
Leu
TAG
[ENA]
¡û
>W1911391062
NWBU01000010
Alphaproteobacteria
Sphingomonas sp. FW-11 [NWBU]
447182
447266
+
Leu
TAG
[ENA]
¡û
>W1911398112
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
931052
930968
-
Leu
TAG
[ENA]
¡û
>W1911615002
POYF01000001
Alphaproteobacteria
Erythrobacter sp. SAORIC-644 [POYF]
391667
391751
+
Leu
TAG
[ENA]
¡û
>W1911765779
QXDC01000002
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
689751
689667
-
Leu
TAG
[ENA]
¡û
>W1911783344
QXTF01000001
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
88559
88643
+
Leu
TAG
[ENA]
¡û
>C151004626
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
411169
411085
-
Leu
TAG
[Ensembl]
¡û
>C151004677
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
411169
411085
-
Leu
TAG
[Ensembl]
¡û
>C151082907
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
1499338
1499422
+
Leu
TAG
-
¡û
>W2010096030
BJMW01000007
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
104958
105042
+
Leu
TAG
[ENA]
¡û
>W2010096067
BJMX01000001
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
44582
44498
-
Leu
TAG
[ENA]
¡û
>W2010438018
JAAAPO010000001
Alphaproteobacteria
Novosphingobium sp. FSY-8 [JAAAPO]
313530
313614
+
Leu
TAG
[ENA]
¡û
>W2010559749
JAASQK010000001
Alphaproteobacteria
Sphingomonas oligoaromativorans DSM 102246 [JAASQK]
654808
654892
+
Leu
TAG
[ENA]
¡û
>W2010669944
JACCAR010000001
Alphaproteobacteria
Sphingomonas sp. R3G8D [JACCAR]
994704
994788
+
Leu
TAG
[ENA]
¡û
>W2010682048
JACEIA010000006
Alphaproteobacteria
Sphingomonas sp. CGMCC 1.13658 [JACEIA]
154141
154225
+
Leu
TAG
[ENA]
¡û
>W2010709033
JACHLW010000001
Alphaproteobacteria
Sphingomonas sp. R1S3D [JACHLW]
3331793
3331877
+
Leu
TAG
[ENA]
¡û
>W2010724143
JACIDD010000001
Alphaproteobacteria
Sphingomonas desiccabilis DSM 16792 [JACIDD]
797380
797464
+
Leu
TAG
[ENA]
¡û
>W2010731907
JACIJL010000001
Alphaproteobacteria
Altererythrobacter atlanticus DSM 100738 [JACIJL]
258949
259033
+
Leu
TAG
[ENA]
¡û
>W2010918559
MWMO01000001
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
728716
728800
+
Leu
TAG
[ENA]
¡û
>W2011333030
QXTF01000001
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
88559
88643
+
Leu
TAG
[ENA]
¡û
>W2011549745
SDPT01000001
Alphaproteobacteria
Sphingomonas desiccabilis CP1D [SDPT]
852521
852605
+
Leu
TAG
[ENA]
¡û
>W2011670393
SPHY01000002
Alphaproteobacteria
Sphingomonas sp. ZLT-5 [SPHY]
111314
111398
+
Leu
TAG
[ENA]
¡û
>W2012019572
VFNW01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-23394 [VFNW]
1065421
1065505
+
Leu
TAG
[ENA]
¡û
>W2012019988
VFOD01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4492 [VFOD]
7619
7535
-
Leu
TAG
[ENA]
¡û
>W2012020074
VFOF01000001
Alphaproteobacteria
Zymomonas mobilis AN0101 [VFOF]
1061658
1061742
+
Leu
TAG
[ENA]
¡û
>W2012020115
VFOG01000001
Alphaproteobacteria
Zymomonas mobilis DSM 14017 [VFOG]
170747
170831
+
Leu
TAG
[ENA]
¡û
>W2012020179
VFOH01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12495 [VFOH]
1734288
1734372
+
Leu
TAG
[ENA]
¡û
>W2012020221
VFOI01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12494 [VFOI]
1093092
1093176
+
Leu
TAG
[ENA]
¡û
>W2012046557
VIVF01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12497 [VIVF]
825406
825490
+
Leu
TAG
[ENA]
¡û
>W2012046642
VIVG01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4286 [VIVG]
342794
342710
-
Leu
TAG
[ENA]
¡û
>W2012047471
VIVT01000014
Alphaproteobacteria
Zymomonas mobilis NRRL B-14022 [VIVT]
24997
24913
-
Leu
TAG
[ENA]
¡û
>W2012425084
WQMS01000008
Alphaproteobacteria
Sphingomonas sp. MAH-20 [WQMS]
154141
154225
+
Leu
TAG
[ENA]
¡û
>W2012438978
WTYJ01000001
Alphaproteobacteria
Altererythrobacter xixiisoli S36 [WTYJ]
788882
788798
-
Leu
TAG
[ENA]
¡û
>W2012439310
WTYQ01000002
Alphaproteobacteria
Altererythrobacter indicus DSM 18604 [WTYQ]
438538
438454
-
Leu
TAG
[ENA]
¡û
>W2012439461
WTYT01000005
Alphaproteobacteria
Altererythrobacter endophyticus LMG 29518 [WTYT]
273358
273274
-
Leu
TAG
[ENA]
¡û
>W2012439734
WTZA01000001
Alphaproteobacteria
Altererythrobacter aerius 100921-2 [WTZA]
1121102
1121018
-
Leu
TAG
[ENA]
¡û
>C211367558
CP079220
Alphaproteobacteria
Zymomonas mobilis ZM401 [CP079220]
1031987
1031903
-
Leu
TAG
-
¡û
>C211405873
CP083898
Alphaproteobacteria
Zymomonas mobilis ZM481 [CP083898]
1117990
1118074
+
Leu
TAG
-
¡û
>W1510019417
BBWU01000029
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
55160
55076
-
Leu
TAG
[ENA]
¡û
>W2310025406
BSOO01000012
Alphaproteobacteria
Sphingomonas astaxanthinifaciens NBRC 102146 [BSOO]
49034
49118
+
Leu
TAG
[ENA]
¡û
>C10114610
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
408891
408807
-
Leu
TAG
[Ensembl]
¡û
>C11124250
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
367727
367643
-
Leu
TAG
[Ensembl]
¡û
>C121003168
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
407082
406998
-
Leu
TAG
[Ensembl]
¡û
>C121015284
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
403894
403810
-
Leu
TAG
[Ensembl]
¡û
>W1610550576
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3396257
3396341
+
Leu
TAG
[ENA]
¡û
>W1610732121
LMJZ01000013
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
17742
17826
+
Leu
TAG
[ENA]
¡û
>W1610732350
LMKE01000001
Alphaproteobacteria
Sphingomonas sp. Leaf10 [LMKE]
391842
391926
+
Leu
TAG
[ENA]
¡û
>W1610732900
LMKP01000034
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
41733
41817
+
Leu
TAG
[ENA]
¡û
>W1610733031
LMKS01000010
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
17751
17835
+
Leu
TAG
[ENA]
¡û
>W1610734200
LMLN01000028
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
525043
525127
+
Leu
TAG
[ENA]
¡û
>W1610734274
LMLP01000001
Alphaproteobacteria
Sphingomonas sp. Leaf67 [LMLP]
172705
172621
-
Leu
TAG
[ENA]
¡û
>W1610909926
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
401615
401699
+
Leu
TAG
[ENA]
¡û
>W1710660339
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3396257
3396341
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK